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Packages that use Taxon | |
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org.biojava.bio.program.homologene | Support classes for Homologene data. |
Uses of Taxon in org.biojava.bio.program.homologene |
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Classes in org.biojava.bio.program.homologene that implement Taxon | |
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static class |
Taxon.TaxonStub
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Fields in org.biojava.bio.program.homologene declared as Taxon | |
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static Taxon |
Taxon.A_THALIANA
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static Taxon |
Taxon.B_TAURUS
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static Taxon |
Taxon.C_ELEGANS
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static Taxon |
Taxon.D_MELANOGASTER
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static Taxon |
Taxon.D_RERIO
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static Taxon |
Taxon.H_SAPIENS
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static Taxon |
Taxon.H_VULGARE
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static Taxon |
Taxon.L_ESCULENTUM
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static Taxon |
Taxon.M_MUSCULUS
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static Taxon |
Taxon.M_TRUNCULATA
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static Taxon |
Taxon.O_SATIVA
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static Taxon |
Taxon.R_NORVEGICUS
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static Taxon |
Taxon.S_SCROFA
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static Taxon |
Taxon.T_AESTIVUM
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static Taxon |
Taxon.X_LAEVIS
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static Taxon |
Taxon.Z_MAYS
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Methods in org.biojava.bio.program.homologene that return Taxon | |
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static Taxon |
HomologeneTools.createTaxon(int taxonID,
java.lang.String description)
add a Taxon |
Taxon |
SimpleOrthologue.getTaxon()
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Taxon |
Orthologue.getTaxon()
return the Taxon associated with this orthologue |
static Taxon |
HomologeneTools.getTaxon(int taxonID)
get the Taxon corresponding to this Taxon ID |
Methods in org.biojava.bio.program.homologene with parameters of type Taxon | |
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Orthologue |
SimpleHomologeneDB.createOrthologue(Taxon taxon,
java.lang.String locusID,
java.lang.String homologeneID,
java.lang.String accession)
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Orthologue |
HomologeneDB.createOrthologue(Taxon taxon,
java.lang.String locusID,
java.lang.String homologeneID,
java.lang.String accession)
Create an orthologue. |
Constructors in org.biojava.bio.program.homologene with parameters of type Taxon | |
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OrthologueFilter.ByTaxon(Taxon taxon)
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OrthoPairSetFilter.ByTaxon(Taxon taxon)
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SimpleOrthologue(Taxon taxon,
java.lang.String locusID,
java.lang.String homologeneID,
java.lang.String accession)
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