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public interface ARAlignment
ARAlignment is an interface that defines methods for adding and removing seqeunces from an Alignment.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biojava.bio.symbol.Alignment |
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Alignment.SymbolListIterator |
Field Summary | |
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static ChangeType |
ADD_LABEL
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static ChangeType |
REMOVE_LABEL
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Fields inherited from interface org.biojava.bio.symbol.Alignment |
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CONTENT |
Fields inherited from interface org.biojava.bio.symbol.SymbolList |
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EDIT, EMPTY_LIST |
Method Summary | |
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void |
addSequence(AlignmentElement ae)
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void |
removeSequence(java.lang.Object label)
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Methods inherited from interface org.biojava.bio.symbol.Alignment |
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getLabels, subAlignment, symbolAt, symbolListForLabel, symbolListIterator |
Methods inherited from interface org.biojava.bio.symbol.SymbolList |
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edit, getAlphabet, iterator, length, seqString, subList, subStr, symbolAt, toList |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Field Detail |
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static final ChangeType ADD_LABEL
static final ChangeType REMOVE_LABEL
Method Detail |
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void addSequence(AlignmentElement ae) throws ChangeVetoException, BioException
ChangeVetoException
BioException
void removeSequence(java.lang.Object label) throws ChangeVetoException
ChangeVetoException
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