Uses of Class
org.biojava.bio.program.fastq.Fastq

Packages that use Fastq
org.biojava.bio.program.fastq FASTQ and variants sequence format IO. 
 

Uses of Fastq in org.biojava.bio.program.fastq
 

Methods in org.biojava.bio.program.fastq that return Fastq
 Fastq FastqBuilder.build()
          Build and return a new FASTQ formatted sequence configured from the properties of this builder.
 

Methods in org.biojava.bio.program.fastq that return types with arguments of type Fastq
 java.lang.Iterable<Fastq> FastqReader.read(java.io.File file)
          Read zero or more FASTQ formatted sequences from the specified file.
 java.lang.Iterable<Fastq> FastqReader.read(java.io.InputStream inputStream)
          Read zero or more FASTQ formatted sequences from the specified input stream.
 java.lang.Iterable<Fastq> FastqReader.read(java.net.URL url)
          Read zero or more FASTQ formatted sequences from the specified url.
 

Methods in org.biojava.bio.program.fastq with parameters of type Fastq
<T extends java.lang.Appendable>
T
FastqWriter.append(T appendable, Fastq... fastq)
          Append the specified FASTQ formatted sequences to the specified appendable.
protected  void SangerFastqWriter.validate(Fastq fastq)
          Validate the specified FASTQ formatted sequence for writing.
protected  void SolexaFastqWriter.validate(Fastq fastq)
          Validate the specified FASTQ formatted sequence for writing.
protected  void IlluminaFastqWriter.validate(Fastq fastq)
          Validate the specified FASTQ formatted sequence for writing.
 void FastqWriter.write(java.io.File file, Fastq... fastq)
          Write the specified FASTQ formatted sequences to the specified file.
 void FastqWriter.write(java.io.OutputStream outputStream, Fastq... fastq)
          Write the specified FASTQ formatted sequences to the specified output stream.
 

Method parameters in org.biojava.bio.program.fastq with type arguments of type Fastq
<T extends java.lang.Appendable>
T
FastqWriter.append(T appendable, java.lang.Iterable<Fastq> fastq)
          Append the specified FASTQ formatted sequences to the specified appendable.
 void FastqWriter.write(java.io.File file, java.lang.Iterable<Fastq> fastq)
          Write the specified FASTQ formatted sequences to the specified file.
 void FastqWriter.write(java.io.OutputStream outputStream, java.lang.Iterable<Fastq> fastq)
          Write the specified FASTQ formatted sequences to the specified output stream.