org.biojava.bio.symbol
Class DoubleAlphabet.DoubleRange

java.lang.Object
  extended by org.biojava.utils.Unchangeable
      extended by org.biojava.bio.symbol.DoubleAlphabet.DoubleRange
All Implemented Interfaces:
java.io.Serializable, Annotatable, BasisSymbol, Symbol, Changeable
Enclosing class:
DoubleAlphabet

public static class DoubleAlphabet.DoubleRange
extends Unchangeable
implements BasisSymbol, java.io.Serializable

A range of double values. Get these via DoubleAlphabet.getSymbol(double, double).

Author:
Matthew Pocock
See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
Annotatable.AnnotationForwarder
 
Field Summary
 
Fields inherited from interface org.biojava.bio.Annotatable
ANNOTATION
 
Constructor Summary
protected DoubleAlphabet.DoubleRange(double minVal, double maxVal)
           
 
Method Summary
 Annotation getAnnotation()
          Should return the associated annotation object.
 Alphabet getMatches()
          The alphabet containing the symbols matched by this ambiguity symbol.
 double getMaxValue()
           
 double getMinValue()
           
 java.lang.String getName()
          The long name for the symbol.
 java.util.List getSymbols()
           The list of symbols that this symbol is composed from.
 
Methods inherited from class org.biojava.utils.Unchangeable
addChangeListener, addChangeListener, addForwarder, getForwarders, getListeners, isUnchanging, removeChangeListener, removeChangeListener, removeForwarder
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
 

Constructor Detail

DoubleAlphabet.DoubleRange

protected DoubleAlphabet.DoubleRange(double minVal,
                                     double maxVal)
Method Detail

getAnnotation

public Annotation getAnnotation()
Description copied from interface: Annotatable
Should return the associated annotation object.

Specified by:
getAnnotation in interface Annotatable
Returns:
an Annotation object, never null

getName

public java.lang.String getName()
Description copied from interface: Symbol
The long name for the symbol.

Specified by:
getName in interface Symbol
Returns:
the long name

getMatches

public Alphabet getMatches()
Description copied from interface: Symbol
The alphabet containing the symbols matched by this ambiguity symbol.

This alphabet contains all of, and only, the symbols matched by this symbol. For example, the symbol representing the DNA ambiguity code for W would contain the symbol for A and T from the DNA alphabet.

Specified by:
getMatches in interface Symbol
Returns:
the Alphabet of symbols matched by this symbol

getSymbols

public java.util.List getSymbols()
Description copied from interface: BasisSymbol

The list of symbols that this symbol is composed from.

In the usual case, this list will contain just this single symbol. In the case where a symbol represents an ordered combination of other symbols, the list will contain each of these BasisSymbols.

Specified by:
getSymbols in interface BasisSymbol
Returns:
the List of Symbols that this Symbol is built from

getMinValue

public double getMinValue()

getMaxValue

public double getMaxValue()