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java.lang.Objectorg.biojava.utils.AbstractChangeable
org.biojavax.ga.impl.AbstractOrganism
org.biojavax.ga.impl.SimpleOrganism
public class SimpleOrganism
A Simple Haploid Organism implementation
Field Summary |
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Fields inherited from class org.biojavax.ga.impl.AbstractOrganism |
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chromosomes |
Fields inherited from interface org.biojavax.ga.Organism |
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CHROMOSOMES, NAME |
Constructor Summary | |
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SimpleOrganism()
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SimpleOrganism(Organism org,
java.lang.String name)
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SimpleOrganism(java.lang.String name)
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Method Summary | |
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boolean |
isHaploid()
Simple Organisms are Halpoid |
Organism |
replicate(java.lang.String name)
Creates a replica of this Organism with a new name. |
protected void |
setChromImpl(SymbolList[] chromosomes)
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Methods inherited from class org.biojavax.ga.impl.AbstractOrganism |
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getChromosomes, getFitness, getName, setChromosomes, setFitness, setName |
Methods inherited from class org.biojava.utils.AbstractChangeable |
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addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Constructor Detail |
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public SimpleOrganism()
public SimpleOrganism(java.lang.String name)
public SimpleOrganism(Organism org, java.lang.String name)
Method Detail |
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protected void setChromImpl(SymbolList[] chromosomes)
setChromImpl
in class AbstractOrganism
public boolean isHaploid()
isHaploid
in interface Organism
isHaploid
in class AbstractOrganism
public Organism replicate(java.lang.String name)
Organism
Organism
with a new name.
name
- the new name for the sequence.
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