Uses of Class
org.biojava.bio.proteomics.Protease

Packages that use Protease
org.biojava.bio.proteomics Utilities to aid in performing various physical analysis of proteins. 
 

Uses of Protease in org.biojava.bio.proteomics
 

Methods in org.biojava.bio.proteomics that return Protease
static Protease ProteaseManager.createProtease(java.lang.String cleaveRes, boolean endoProtease, java.lang.String name)
           
static Protease ProteaseManager.createProtease(java.lang.String cleaveRes, boolean endoProtease, java.lang.String notCleaveRes, java.lang.String name)
           
static Protease ProteaseManager.createProtease(SymbolList cleaveRes, boolean endoProtease, java.lang.String name)
           
static Protease ProteaseManager.createProtease(SymbolList cleaveRes, boolean endoProtease, SymbolList notCleaveRes, java.lang.String name)
          Creates and registers a new Protease.
static Protease ProteaseManager.getArg_C()
           
static Protease ProteaseManager.getAsp_N()
           
static Protease ProteaseManager.getChymotrypsin()
           
static Protease ProteaseManager.getCNBr()
           
static Protease ProteaseManager.getGlu_C_bicarbonate()
           
static Protease ProteaseManager.getGlu_C_phosphate()
           
static Protease ProteaseManager.getLys_C()
           
static Protease ProteaseManager.getProteaseByName(java.lang.String proteaseName)
          Gets a Protease instance by name.
static Protease Protease.getProteaseByName(java.lang.String proteaseName)
          Retrieves a reference to the named Protease.
static Protease ProteaseManager.getTrypsin()
           
 

Methods in org.biojava.bio.proteomics with parameters of type Protease
static void ProteaseManager.registerProtease(Protease prot)
          Registers a protease and ensures its flyweight status
 void Digest.setProtease(Protease protease)