org.biojava.bio.gui.sequence
Class GlyphFeatureRenderer
java.lang.Object
org.biojava.utils.AbstractChangeable
org.biojava.bio.gui.sequence.SequenceRendererWrapper
org.biojava.bio.gui.sequence.FilteringRenderer
org.biojava.bio.gui.sequence.GlyphFeatureRenderer
- All Implemented Interfaces:
- java.io.Serializable, FeatureRenderer, SequenceRenderer, Changeable
- Direct Known Subclasses:
- SecondaryStructureFeatureRenderer
public class GlyphFeatureRenderer
- extends FilteringRenderer
- implements FeatureRenderer
A FeatureRenderer that renders a particular Glyph for Features accepted by a
particular FeatureFilter
- Since:
- 1.5
- Author:
- Mark Southern, Andreas Dräger
- See Also:
Glyph
,
Serialized Form
Methods inherited from class org.biojava.bio.gui.sequence.FilteringRenderer |
getChangeSupport, getContext, getFilter, getMinimumLeader, getMinimumTrailer, getRecurse, hasListeners, paint, processMouseEvent, setFilter, setRecurse, toString |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
fList
protected java.util.List<FeatureFilter> fList
gList
protected java.util.List<Glyph> gList
GlyphFeatureRenderer
public GlyphFeatureRenderer()
addFilterAndGlyph
public void addFilterAndGlyph(FeatureFilter ff,
Glyph g)
throws ChangeVetoException
- Throws:
ChangeVetoException
removeFilterWithGlyph
public void removeFilterWithGlyph(FeatureFilter ff)
throws ChangeVetoException
- Throws:
ChangeVetoException
getFeatureFilter
public FeatureFilter getFeatureFilter(int i)
- Returns the ith
FeatureFilter
in this renderer.
- Parameters:
i
-
- Returns:
- the featureFilter
containsFilter
public boolean containsFilter(FeatureFilter ff)
- Returns true if the given
FeatureFilter
is already contained in this
renderer.
- Parameters:
ff
-
- Returns:
- flag if featurefilter is contained
setGlyphForFilter
public void setGlyphForFilter(FeatureFilter ff,
Glyph glyph)
throws java.util.NoSuchElementException
- Allows setting another
Glyph
object to be painted for the given
FeatureFilter.
- Parameters:
ff
- glyph
-
- Throws:
ChangeVetoException
java.util.NoSuchElementException
getGlyphForFilter
public Glyph getGlyphForFilter(FeatureFilter ff)
throws java.util.NoSuchElementException
- Returns the
Glyph
object which is assigned to the given feature
filter.
- Parameters:
ff
-
- Returns:
Glyph
object
- Throws:
java.util.NoSuchElementException
setDepth
public void setDepth(double depth)
getDepth
public double getDepth(SequenceRenderContext src)
- Returns the depth property of this class.
- Specified by:
getDepth
in interface FeatureRenderer
- Specified by:
getDepth
in interface SequenceRenderer
- Overrides:
getDepth
in class FilteringRenderer
- Parameters:
src
- the SequenceRenderContext to return info for
- Returns:
- the depth
processMouseEvent
public FeatureHolder processMouseEvent(FeatureHolder fh,
SequenceRenderContext src,
java.awt.event.MouseEvent me)
- Specified by:
processMouseEvent
in interface FeatureRenderer
renderFeature
public void renderFeature(java.awt.Graphics2D g2,
Feature f,
SequenceRenderContext src)
- Specified by:
renderFeature
in interface FeatureRenderer