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Packages that use ModelTrainer | |
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org.biojava.bio.dist | Probability distributions over Alphabets. |
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
Uses of ModelTrainer in org.biojava.bio.dist |
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Methods in org.biojava.bio.dist with parameters of type ModelTrainer | |
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void |
PairDistribution.registerWithTrainer(ModelTrainer trainer)
Register this paired distribution with a model trainer. |
Uses of ModelTrainer in org.biojava.bio.dp |
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Classes in org.biojava.bio.dp that implement ModelTrainer | |
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class |
SimpleModelTrainer
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Methods in org.biojava.bio.dp with parameters of type ModelTrainer | |
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void |
Trainable.registerWithTrainer(ModelTrainer mt)
Perform any registration that is necessary with mt. |
void |
SimpleEmissionState.registerWithTrainer(ModelTrainer trainer)
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void |
WMAsMM.registerWithTrainer(ModelTrainer modelTrainer)
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protected double |
BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer,
SymbolList symList)
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protected abstract double |
AbstractTrainer.singleSequenceIteration(ModelTrainer trainer,
SymbolList symList)
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protected double |
BaumWelchTrainer.singleSequenceIteration(ModelTrainer trainer,
SymbolList symList)
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protected double |
BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer,
SymbolList symList,
ScoreType scoreType)
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