Uses of Interface
org.biojava.bio.gui.sequence.PairwiseSequenceRenderer

Packages that use PairwiseSequenceRenderer
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
 

Uses of PairwiseSequenceRenderer in org.biojava.bio.gui.sequence
 

Classes in org.biojava.bio.gui.sequence that implement PairwiseSequenceRenderer
 class CrosshairRenderer
           CrosshairRenderer draws a crosshair, optionally with coordinates.
 class PairwiseDiagonalRenderer
          PairwiseDiagonalRenderer renders a region of similarity between two sequences as a straight line.
 class PairwiseFilteringRenderer
          PairwiseFilteringRenderer wraps a PairwiseSequenceRenderer and filters the PairwiseRenderContexts passed to it.
 class PairwiseOverlayRenderer
          PairwiseOverlayRenderer allows a list of other PairwiseSequenceRenderers to superimpose their output.
 

Methods in org.biojava.bio.gui.sequence that return PairwiseSequenceRenderer
 PairwiseSequenceRenderer PairwiseFilteringRenderer.getRenderer()
          getRenderer return the current renderer.
 PairwiseSequenceRenderer PairwiseSequencePanel.getRenderer()
          getRenderer returns the current PairwiseSequenceRenderer.
 

Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRenderer
protected  void PairwiseOverlayRenderer._addRenderer(PairwiseSequenceRenderer renderer)
           
protected  void PairwiseOverlayRenderer._removeRenderer(PairwiseSequenceRenderer renderer)
           
 void PairwiseOverlayRenderer.addRenderer(PairwiseSequenceRenderer renderer)
          addRenderer adds a renderer.
 void PairwiseOverlayRenderer.removeRenderer(PairwiseSequenceRenderer renderer)
          removeRenderer removes a renderer.
 void PairwiseFilteringRenderer.setRenderer(PairwiseSequenceRenderer renderer)
          setRenderer sets the renderer.
 void PairwiseSequencePanel.setRenderer(PairwiseSequenceRenderer renderer)
          setRenderer sets the current PairwiseSequenceRenderer.
 

Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRenderer
PairwiseFilteringRenderer(PairwiseSequenceRenderer renderer)
          Creates a new PairwiseFilteringRenderer which uses a filter which accepts all features.
PairwiseFilteringRenderer(PairwiseSequenceRenderer renderer, FeatureFilter filter, boolean recurse)
          Creates a new PairwiseFilteringRenderer.
PairwiseSequenceRenderer.PairwiseRendererForwarder(PairwiseSequenceRenderer source, ChangeSupport cs)
          Creates a new PairwiseRendererForwarder.