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java.lang.Objectorg.biojava.bio.program.homologene.SimpleOrthologue
public class SimpleOrthologue
this entry contains data about the orthologue.
Constructor Summary | |
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SimpleOrthologue(int taxonID,
java.lang.String locusID,
java.lang.String homologeneID,
java.lang.String accession)
this constructor does the Taxon lookup for you too |
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SimpleOrthologue(Taxon taxon,
java.lang.String locusID,
java.lang.String homologeneID,
java.lang.String accession)
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Method Summary | |
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boolean |
equals(java.lang.Object o)
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java.lang.String |
getAccession()
get the Accession ID associated with this orthologue. |
java.lang.String |
getHomologeneID()
get the Homologene ID. |
java.lang.String |
getLocusID()
get the locus ID associated with this orthologue. |
Taxon |
getTaxon()
return the Taxon associated with this orthologue |
int |
getTaxonID()
a convenience method to return the TaxonID for thsi orhtologue. |
java.lang.String |
getTitle()
return the title used by Genbank for this protein |
void |
setTitle(java.lang.String title)
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Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SimpleOrthologue(Taxon taxon, java.lang.String locusID, java.lang.String homologeneID, java.lang.String accession)
public SimpleOrthologue(int taxonID, java.lang.String locusID, java.lang.String homologeneID, java.lang.String accession) throws java.lang.IllegalArgumentException
java.lang.IllegalArgumentException
Method Detail |
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public java.lang.String getTitle()
Orthologue
getTitle
in interface Orthologue
public Taxon getTaxon()
Orthologue
getTaxon
in interface Orthologue
public int getTaxonID()
Orthologue
getTaxonID
in interface Orthologue
public java.lang.String getLocusID()
Orthologue
getLocusID
in interface Orthologue
public java.lang.String getHomologeneID()
Orthologue
getHomologeneID
in interface Orthologue
public java.lang.String getAccession()
Orthologue
getAccession
in interface Orthologue
public void setTitle(java.lang.String title)
setTitle
in interface Orthologue
public boolean equals(java.lang.Object o)
equals
in class java.lang.Object
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