org.biojava.bio.structure.gui.util
Class AlignedPosition

java.lang.Object
  extended by org.biojava.bio.structure.gui.util.AlignedPosition

public class AlignedPosition
extends java.lang.Object


Field Summary
static int EQUIVALENT
          flag if this position is equivalent
static int NOT_ALIGNED
          they can be shown in the same column (for a compact display) , but they are not structurally equivalent
 
Constructor Summary
AlignedPosition()
           
 
Method Summary
 int getEquivalent()
           
 int getPos(int position)
           
 int getPos1()
           
 int getPos2()
           
 void setEquivalent(int equivalent)
           
 void setPos(int position, int pos)
           
 void setPos1(int pos1)
           
 void setPos2(int pos2)
           
 java.lang.String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

EQUIVALENT

public static final int EQUIVALENT
flag if this position is equivalent

See Also:
Constant Field Values

NOT_ALIGNED

public static final int NOT_ALIGNED
they can be shown in the same column (for a compact display) , but they are not structurally equivalent

See Also:
Constant Field Values
Constructor Detail

AlignedPosition

public AlignedPosition()
Method Detail

getPos

public int getPos(int position)

setPos

public void setPos(int position,
                   int pos)

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object

getPos1

public int getPos1()

setPos1

public void setPos1(int pos1)

getPos2

public int getPos2()

setPos2

public void setPos2(int pos2)

getEquivalent

public int getEquivalent()

setEquivalent

public void setEquivalent(int equivalent)