Methods in org.biojava.bio.program.gff3 with parameters of type GFF3DocumentHandler |
protected GFF3Record |
GFF3Parser.createRecord(GFF3DocumentHandler handler,
java.util.List aList,
java.lang.String rest,
java.lang.String comment,
Ontology ontology,
Ontology fallBack)
Actually turns a list of tokens, some value string and a comment into a
GFF3Record and informs
handler. |
void |
GFF3Parser.parse(java.io.BufferedReader bReader,
GFF3DocumentHandler handler,
Ontology ontology)
Informs handler of each line of
gff read from bReader. |
void |
GFF3Parser.parse(java.io.BufferedReader bReader,
GFF3DocumentHandler handler,
Ontology ontology,
java.lang.String locator)
Informs handler of each line of
GFF read from bReader |