org.biojava.bio.seq.io.agave
Class AGAVEMatchRegionPropHandler

java.lang.Object
  extended by org.biojava.bio.seq.io.agave.StAXContentHandlerBase
      extended by org.biojava.bio.seq.io.agave.StAXPropertyHandler
          extended by org.biojava.bio.seq.io.agave.AGAVEMatchRegionPropHandler
All Implemented Interfaces:
AGAVEDbIdCallbackItf, AGAVEEvidenceCallbackItf, StAXContentHandler

public class AGAVEMatchRegionPropHandler
extends StAXPropertyHandler
implements AGAVEDbIdCallbackItf, AGAVEEvidenceCallbackItf

Deals with match_region

Author:
Hanning Ni Doubletwist Inc

Field Summary
static StAXHandlerFactory AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY
           
 
Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
featureListener, staxenv
 
Method Summary
 void addDbId(AGAVEDbId id)
           
 void addElementId(java.lang.String id)
           
 void endElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler)
          Element specific exit handler Subclass to do anything useful.
 void startElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs)
          Element-specific handler.
 
Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
addHandler, endElement, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement
 
Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY
Method Detail

addDbId

public void addDbId(AGAVEDbId id)
Specified by:
addDbId in interface AGAVEDbIdCallbackItf

addElementId

public void addElementId(java.lang.String id)
Specified by:
addElementId in interface AGAVEEvidenceCallbackItf

startElementHandler

public void startElementHandler(java.lang.String nsURI,
                                java.lang.String localName,
                                java.lang.String qName,
                                org.xml.sax.Attributes attrs)
                         throws org.xml.sax.SAXException
Description copied from class: StAXPropertyHandler
Element-specific handler. Subclass this to do something useful!

Overrides:
startElementHandler in class StAXPropertyHandler
Throws:
org.xml.sax.SAXException

endElementHandler

public void endElementHandler(java.lang.String nsURI,
                              java.lang.String localName,
                              java.lang.String qName,
                              StAXContentHandler handler)
                       throws org.xml.sax.SAXException
Description copied from class: StAXPropertyHandler
Element specific exit handler Subclass to do anything useful.

Overrides:
endElementHandler in class StAXPropertyHandler
Throws:
org.xml.sax.SAXException