org.biojava.bio.seq.io.game
Class SequenceContentHandlerBase

java.lang.Object
  extended by org.biojava.utils.stax.StAXContentHandlerBase
      extended by org.biojava.bio.seq.io.game.SequenceContentHandlerBase
All Implemented Interfaces:
StAXContentHandler
Direct Known Subclasses:
GAMEResiduesPropHandler

public class SequenceContentHandlerBase
extends StAXContentHandlerBase

StAX handler for elements containing sequence

Since:
1.8
Author:
David Huen

Constructor Summary
SequenceContentHandlerBase()
           
 
Method Summary
 void characters(char[] ch, int start, int length)
          Signal a span of character data in the XML input.
 void endElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler)
           
 void setStreamParser(StreamParser parser)
          assign a StreamParser object to instance.
 void startElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs, DelegationManager dm)
           
 
Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase
endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SequenceContentHandlerBase

public SequenceContentHandlerBase()
Method Detail

startElement

public void startElement(java.lang.String nsURI,
                         java.lang.String localName,
                         java.lang.String qName,
                         org.xml.sax.Attributes attrs,
                         DelegationManager dm)
                  throws org.xml.sax.SAXException
Specified by:
startElement in interface StAXContentHandler
Overrides:
startElement in class StAXContentHandlerBase
Throws:
org.xml.sax.SAXException

endElement

public void endElement(java.lang.String nsURI,
                       java.lang.String localName,
                       java.lang.String qName,
                       StAXContentHandler handler)
                throws org.xml.sax.SAXException
Specified by:
endElement in interface StAXContentHandler
Overrides:
endElement in class StAXContentHandlerBase
Throws:
org.xml.sax.SAXException

setStreamParser

public void setStreamParser(StreamParser parser)
assign a StreamParser object to instance.


characters

public void characters(char[] ch,
                       int start,
                       int length)
                throws org.xml.sax.SAXException
Description copied from class: StAXContentHandlerBase
Signal a span of character data in the XML input.

Specified by:
characters in interface StAXContentHandler
Overrides:
characters in class StAXContentHandlerBase
Parameters:
ch - an array of characters
start - index of the first significant character for this event.
length - number of characters significant to this event.
Throws:
org.xml.sax.SAXException