org.biojavax.bio.db.biosql
Class BioSQLFeatureFilter.ByTypeTermName
java.lang.Object
org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
org.biojavax.bio.db.biosql.BioSQLFeatureFilter.ByTypeTermName
- All Implemented Interfaces:
- java.io.Serializable, FeatureFilter, BioSQLFeatureFilter
- Enclosing interface:
- BioSQLFeatureFilter
public static final class BioSQLFeatureFilter.ByTypeTermName
- extends BioSQLFeatureFilter.HibernateFeatureFilter
Construct one of these to filter features by type (name only - parent ontology
is ignored).
- Since:
- 1.5
- Author:
- Richard Holland
- See Also:
- Serialized Form
Nested classes/interfaces inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter |
BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.HibernateFeatureFilter, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation, BioSQLFeatureFilter.Tools |
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter |
FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter |
Constructor Summary |
BioSQLFeatureFilter.ByTypeTermName(java.lang.String typeTermName)
Create a ByTypeTermName filter that filters in all features with typeTerm fields
having name equal to typeTermName. |
Method Summary |
boolean |
accept(Feature f)
Returns true if the feature has a matching type property. |
java.lang.Object |
asCriterion()
This method returns a Hibernate Criterion object that can be used to
query the database. |
java.util.Map |
criterionAliasMap()
Returns a map of property names (keys) to aliases (values), if the criterion
returned by asCriterion() uses aliases at all. |
boolean |
equals(java.lang.Object o)
|
java.lang.String |
getTypeTermName()
|
int |
hashCode()
|
java.lang.String |
toString()
|
Methods inherited from class java.lang.Object |
clone, finalize, getClass, notify, notifyAll, wait, wait, wait |
BioSQLFeatureFilter.ByTypeTermName
public BioSQLFeatureFilter.ByTypeTermName(java.lang.String typeTermName)
- Create a ByTypeTermName filter that filters in all features with typeTerm fields
having name equal to typeTermName.
- Parameters:
typeTermName
- the Term to match typeTermName fields against
getTypeTermName
public java.lang.String getTypeTermName()
accept
public boolean accept(Feature f)
- Returns true if the feature has a matching type property.
- Parameters:
f
- the Feature to evaluate
- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
asCriterion
public java.lang.Object asCriterion()
- Description copied from interface:
BioSQLFeatureFilter
- This method returns a Hibernate Criterion object that can be used to
query the database.
- Returns:
- a Hibernate Criterion object representing this filter.
criterionAliasMap
public java.util.Map criterionAliasMap()
- Description copied from interface:
BioSQLFeatureFilter
- Returns a map of property names (keys) to aliases (values), if the criterion
returned by asCriterion() uses aliases at all. If not, then it must at least
return the empty map else you'll get NullPointerExceptions thrown elsewhere.
- Specified by:
criterionAliasMap
in interface BioSQLFeatureFilter
- Overrides:
criterionAliasMap
in class BioSQLFeatureFilter.HibernateFeatureFilter
- Returns:
- Map a map of property names to aliases used in the criterion.
equals
public boolean equals(java.lang.Object o)
- Overrides:
equals
in class java.lang.Object
hashCode
public int hashCode()
- Overrides:
hashCode
in class java.lang.Object
toString
public java.lang.String toString()
- Overrides:
toString
in class java.lang.Object