org.biojava.bio.dp.twohead
Class Cell

java.lang.Object
  extended by org.biojava.bio.dp.twohead.Cell

public final class Cell
extends java.lang.Object

A single cell in the DP matrix.

The cell is divided into parallel arrays for the cell scores, backpointers and emission probabilities. The scores and backpointer arrays are as long as the number of states in the model. The emissions array is as long as the number of emitting states in the model.

Since:
1.2
Author:
Matthew Pocock

Field Summary
 BackPointer[] backPointers
           
 double[] emissions
           
 double[] scores
           
 
Constructor Summary
Cell()
           
 
Method Summary
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

scores

public double[] scores

backPointers

public BackPointer[] backPointers

emissions

public double[] emissions
Constructor Detail

Cell

public Cell()