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java.lang.Objectorg.biojava.bio.seq.db.biosql.DBHelper
org.biojava.bio.seq.db.biosql.OracleDBHelper
public class OracleDBHelper
This is a DBHelper
that provides support for Oracle
databases.
Nested Class Summary |
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Nested classes/interfaces inherited from class org.biojava.bio.seq.db.biosql.DBHelper |
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DBHelper.BioSequenceStyle, DBHelper.DeleteStyle, DBHelper.JoinStyle |
Field Summary |
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Fields inherited from class org.biojava.bio.seq.db.biosql.DBHelper |
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BIOSEQUENCE_GENERIC, BIOSEQUENCE_ORACLECLOB, DELETE_GENERIC, DELETE_MYSQL4, DELETE_POSTGRESQL, JOIN_GENERIC, JOIN_ORACLE8 |
Constructor Summary | |
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OracleDBHelper(java.sql.Connection connection)
Deprecated. |
Method Summary | |
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java.lang.String |
clobToString(java.sql.Connection conn,
java.sql.ResultSet rs,
int column)
Deprecated. |
boolean |
containsTable(javax.sql.DataSource ds,
java.lang.String tablename)
Deprecated. Detects whether a particular table is present in the database. |
DBHelper.BioSequenceStyle |
getBioSequenceStyle()
Deprecated. Returns the an object indicating the style of biosequence storage that this database should employ. |
int |
getInsertID(java.sql.Connection conn,
java.lang.String table,
java.lang.String columnName)
Deprecated. Returns the id value created during the last insert command. |
DBHelper.JoinStyle |
getJoinStyle()
Deprecated. Returns the an object indicating the style of table joining that this database should employ. |
void |
stringToClob(java.sql.Connection conn,
java.sql.ResultSet rs,
int column,
java.lang.String value)
Deprecated. |
Methods inherited from class org.biojava.bio.seq.db.biosql.DBHelper |
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getDBHelper, getDeleteStyle |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public OracleDBHelper(java.sql.Connection connection)
Method Detail |
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public DBHelper.JoinStyle getJoinStyle()
DBHelper
getJoinStyle
in class DBHelper
public int getInsertID(java.sql.Connection conn, java.lang.String table, java.lang.String columnName) throws java.sql.SQLException
DBHelper
getInsertID
in class DBHelper
java.sql.SQLException
public boolean containsTable(javax.sql.DataSource ds, java.lang.String tablename)
DBHelper
containsTable
in class DBHelper
ds
- a DataSource
that can provide a connection to a databasetablename
- the name of the table.
public DBHelper.BioSequenceStyle getBioSequenceStyle()
DBHelper
getBioSequenceStyle
in class DBHelper
public java.lang.String clobToString(java.sql.Connection conn, java.sql.ResultSet rs, int column)
public void stringToClob(java.sql.Connection conn, java.sql.ResultSet rs, int column, java.lang.String value)
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