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Packages that use StreamParser | |
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org.biojava.bio.seq.io | Classes and interfaces for processing and producing flat-file representations of sequences. |
org.biojava.bio.seq.io.game | Event-driven parsing system for the Gene Annotation Markup Elements (GAME). |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of StreamParser in org.biojava.bio.seq.io |
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Methods in org.biojava.bio.seq.io that return StreamParser | |
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StreamParser |
CharacterTokenization.parseStream(SeqIOListener listener)
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StreamParser |
WordTokenization.parseStream(SeqIOListener siol)
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StreamParser |
SymbolTokenization.parseStream(SeqIOListener listener)
Return an object which can parse an arbitrary character stream into symbols. |
StreamParser |
AlternateTokenization.parseStream(SeqIOListener listener)
Will throw an exception. |
Methods in org.biojava.bio.seq.io with parameters of type StreamParser | |
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protected void |
EmblLikeFormat.processSequenceLine(java.lang.String line,
StreamParser parser)
Deprecated. Dispatch symbol data from SQ-block line of an EMBL-like file. |
Uses of StreamParser in org.biojava.bio.seq.io.game |
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Methods in org.biojava.bio.seq.io.game with parameters of type StreamParser | |
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void |
SequenceContentHandlerBase.setStreamParser(StreamParser parser)
assign a StreamParser object to instance. |
Uses of StreamParser in org.biojava.bio.symbol |
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Methods in org.biojava.bio.symbol that return StreamParser | |
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StreamParser |
SoftMaskedAlphabet.CaseSensitiveTokenization.parseStream(SeqIOListener l)
The current implementation only supports character parsing. |
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