Uses of Interface
org.biojava.bio.dist.OrderNDistribution

Packages that use OrderNDistribution
org.biojava.bio.dist Probability distributions over Alphabets. 
org.biojavax.ga.functions GA functions 
org.biojavax.ga.util Utility functions and helper classes 
 

Uses of OrderNDistribution in org.biojava.bio.dist
 

Classes in org.biojava.bio.dist that implement OrderNDistribution
 class AbstractOrderNDistribution
          Simple base class for OrderNDistributions.
 

Methods in org.biojava.bio.dist with parameters of type OrderNDistribution
protected static Sequence DistributionTools.generateOrderNSequence(java.lang.String name, OrderNDistribution d, int length)
          Deprecated. use generateSequence() or generateSymbolList() instead.
 

Uses of OrderNDistribution in org.biojavax.ga.functions
 

Methods in org.biojavax.ga.functions that return OrderNDistribution
 OrderNDistribution AbstractMutationFunction.getMutationSpectrum()
           
 OrderNDistribution MutationFunction.getMutationSpectrum()
           
 OrderNDistribution MutationFunction.NoMutation.getMutationSpectrum()
           
 

Methods in org.biojavax.ga.functions with parameters of type OrderNDistribution
 void AbstractMutationFunction.setMutationSpectrum(OrderNDistribution mutationSpectrum)
           
 void MutationFunction.setMutationSpectrum(OrderNDistribution mutationSpectrum)
          Sets the Distribution of Symbols that will be selected from when a mutation occurs.
 void MutationFunction.NoMutation.setMutationSpectrum(OrderNDistribution odn)
           
 

Uses of OrderNDistribution in org.biojavax.ga.util
 

Methods in org.biojavax.ga.util that return OrderNDistribution
static OrderNDistribution GATools.standardMutationDistribution(FiniteAlphabet a)
          Makes a mutation Distribution where the probability of a Symbol being mutated to itself is zero and the probability of it being changed to any other Symbol in the Alphabet a is 1.0 / (a.size() - 1.0)
static OrderNDistribution GATools.uniformMutationDistribution(FiniteAlphabet a)
          Makes a 1st order distribution which is infact uniform (equivalent to a uniform zero order distribution).