org.biojava.bio.structure.io.mmcif.model
Class Refine

java.lang.Object
  extended by org.biojava.bio.structure.io.mmcif.model.Refine

public class Refine
extends java.lang.Object


Constructor Summary
Refine()
           
 
Method Summary
 java.lang.String[][] getAniso_B()
           
 java.lang.String getB_iso_max()
           
 java.lang.String getB_iso_mean()
           
 java.lang.String getB_iso_min()
           
 java.lang.String getCorrelation_coeff_Fo_to_Fc_free()
           
 java.lang.String getCorrelation_coeff_Fo_to_Fc()
           
 java.lang.String getDetails()
           
 java.lang.String getEntry_id()
           
 java.lang.String getLs_d_res_high()
           
 java.lang.String getLs_d_res_low()
           
 java.lang.String getLs_number_parameters()
           
 java.lang.String getLs_number_reflns_all()
           
 java.lang.String getLs_number_reflns_obs()
           
 java.lang.String getLs_number_reflns_R_free()
           
 java.lang.String getLs_number_restraints()
           
 java.lang.String getLs_percent_reflns_obs()
           
 java.lang.String getLs_percent_reflns_R_free()
           
 java.lang.String getLs_R_factor_all()
           
 java.lang.String getLs_R_factor_obs()
           
 java.lang.String getLs_R_factor_R_free_error_details()
           
 java.lang.String getLs_R_factor_R_free_error()
           
 java.lang.String getLs_R_factor_R_free()
           
 java.lang.String getLs_R_factor_R_work()
           
 java.lang.String getLs_redundancy_reflns_obs()
           
 java.lang.String getLs_wR_factor_R_free()
           
 java.lang.String getLs_wR_factor_R_work()
           
 java.lang.String getOccupancy_max()
           
 java.lang.String getOccupancy_min()
           
 java.lang.String getOverall_FOM_free_R_set()
           
 java.lang.String getOverall_FOM_work_R_set()
           
 java.lang.String getOverall_SU_B()
           
 java.lang.String getOverall_SU_ML()
           
 java.lang.String getOverall_SU_R_Cruickshank_DPI()
           
 java.lang.String getOverall_SU_R_free()
           
 java.lang.String getPdbx_data_cutoff_high_absF()
           
 java.lang.String getPdbx_data_cutoff_high_rms_absF()
           
 java.lang.String getPdbx_data_cutoff_low_absF()
           
 java.lang.String getPdbx_isotropic_thermal_model()
           
 java.lang.String getPdbx_ls_cross_valid_method()
           
 java.lang.String getPdbx_ls_sigma_F()
           
 java.lang.String getPdbx_ls_sigma_I()
           
 java.lang.String getPdbx_method_to_determine_struct()
           
 java.lang.String getPdbx_overall_ESU_R_Free()
           
 java.lang.String getPdbx_overall_ESU_R()
           
 java.lang.String getPdbx_overall_phase_error()
           
 java.lang.String getPdbx_R_Free_selection_details()
           
 java.lang.String getPdbx_refine_id()
           
 java.lang.String getPdbx_solvent_ion_probe_radii()
           
 java.lang.String getPdbx_solvent_shrinkage_radii()
           
 java.lang.String getPdbx_solvent_vdw_probe_radii()
           
 java.lang.String getPdbx_starting_model()
           
 java.lang.String getPdbx_stereochem_target_val_spec_case()
           
 java.lang.String getPdbx_stereochemistry_target_values()
           
 java.lang.String getSolvent_model_details()
           
 java.lang.String getSolvent_model_param_bsol()
           
 java.lang.String getSolvent_model_param_ksol()
           
 void setAniso_B(java.lang.String[][] aniso_B)
           
 void setB_iso_max(java.lang.String b_iso_max)
           
 void setB_iso_mean(java.lang.String b_iso_mean)
           
 void setB_iso_min(java.lang.String b_iso_min)
           
 void setCorrelation_coeff_Fo_to_Fc_free(java.lang.String correlation_coeff_Fo_to_Fc_free)
           
 void setCorrelation_coeff_Fo_to_Fc(java.lang.String correlation_coeff_Fo_to_Fc)
           
 void setDetails(java.lang.String details)
           
 void setEntry_id(java.lang.String entry_id)
           
 void setLs_d_res_high(java.lang.String ls_d_res_high)
           
 void setLs_d_res_low(java.lang.String ls_d_res_low)
           
 void setLs_number_parameters(java.lang.String ls_number_parameters)
           
 void setLs_number_reflns_all(java.lang.String ls_number_reflns_all)
           
 void setLs_number_reflns_obs(java.lang.String ls_number_reflns_obs)
           
 void setLs_number_reflns_R_free(java.lang.String ls_number_reflns_R_free)
           
 void setLs_number_restraints(java.lang.String ls_number_restraints)
           
 void setLs_percent_reflns_obs(java.lang.String ls_percent_reflns_obs)
           
 void setLs_percent_reflns_R_free(java.lang.String ls_percent_reflns_R_free)
           
 void setLs_R_factor_all(java.lang.String ls_R_factor_all)
           
 void setLs_R_factor_obs(java.lang.String ls_R_factor_obs)
           
 void setLs_R_factor_R_free_error_details(java.lang.String ls_R_factor_R_free_error_details)
           
 void setLs_R_factor_R_free_error(java.lang.String ls_R_factor_R_free_error)
           
 void setLs_R_factor_R_free(java.lang.String ls_R_factor_R_free)
           
 void setLs_R_factor_R_work(java.lang.String ls_R_factor_R_work)
           
 void setLs_redundancy_reflns_obs(java.lang.String ls_redundancy_reflns_obs)
           
 void setLs_wR_factor_R_free(java.lang.String ls_wR_factor_R_free)
           
 void setLs_wR_factor_R_work(java.lang.String ls_wR_factor_R_work)
           
 void setOccupancy_max(java.lang.String occupancy_max)
           
 void setOccupancy_min(java.lang.String occupancy_min)
           
 void setOverall_FOM_free_R_set(java.lang.String overall_FOM_free_R_set)
           
 void setOverall_FOM_work_R_set(java.lang.String overall_FOM_work_R_set)
           
 void setOverall_SU_B(java.lang.String overall_SU_B)
           
 void setOverall_SU_ML(java.lang.String overall_SU_ML)
           
 void setOverall_SU_R_Cruickshank_DPI(java.lang.String overall_SU_R_Cruickshank_DPI)
           
 void setOverall_SU_R_free(java.lang.String overall_SU_R_free)
           
 void setPdbx_data_cutoff_high_absF(java.lang.String pdbx_data_cutoff_high_absF)
           
 void setPdbx_data_cutoff_high_rms_absF(java.lang.String pdbx_data_cutoff_high_rms_absF)
           
 void setPdbx_data_cutoff_low_absF(java.lang.String pdbx_data_cutoff_low_absF)
           
 void setPdbx_isotropic_thermal_model(java.lang.String pdbx_isotropic_thermal_model)
           
 void setPdbx_ls_cross_valid_method(java.lang.String pdbx_ls_cross_valid_method)
           
 void setPdbx_ls_sigma_F(java.lang.String pdbx_ls_sigma_F)
           
 void setPdbx_ls_sigma_I(java.lang.String pdbx_ls_sigma_I)
           
 void setPdbx_method_to_determine_struct(java.lang.String pdbx_method_to_determine_struct)
           
 void setPdbx_overall_ESU_R_Free(java.lang.String pdbx_overall_ESU_R_Free)
           
 void setPdbx_overall_ESU_R(java.lang.String pdbx_overall_ESU_R)
           
 void setPdbx_overall_phase_error(java.lang.String pdbx_overall_phase_error)
           
 void setPdbx_R_Free_selection_details(java.lang.String pdbx_R_Free_selection_details)
           
 void setPdbx_refine_id(java.lang.String pdbx_refine_id)
           
 void setPdbx_solvent_ion_probe_radii(java.lang.String pdbx_solvent_ion_probe_radii)
           
 void setPdbx_solvent_shrinkage_radii(java.lang.String pdbx_solvent_shrinkage_radii)
           
 void setPdbx_solvent_vdw_probe_radii(java.lang.String pdbx_solvent_vdw_probe_radii)
           
 void setPdbx_starting_model(java.lang.String pdbx_starting_model)
           
 void setPdbx_stereochem_target_val_spec_case(java.lang.String pdbx_stereochem_target_val_spec_case)
           
 void setPdbx_stereochemistry_target_values(java.lang.String pdbx_stereochemistry_target_values)
           
 void setSolvent_model_details(java.lang.String solvent_model_details)
           
 void setSolvent_model_param_bsol(java.lang.String solvent_model_param_bsol)
           
 void setSolvent_model_param_ksol(java.lang.String solvent_model_param_ksol)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Refine

public Refine()
Method Detail

getEntry_id

public java.lang.String getEntry_id()

setEntry_id

public void setEntry_id(java.lang.String entry_id)

getLs_number_reflns_obs

public java.lang.String getLs_number_reflns_obs()

setLs_number_reflns_obs

public void setLs_number_reflns_obs(java.lang.String ls_number_reflns_obs)

getLs_number_reflns_all

public java.lang.String getLs_number_reflns_all()

setLs_number_reflns_all

public void setLs_number_reflns_all(java.lang.String ls_number_reflns_all)

getPdbx_ls_sigma_I

public java.lang.String getPdbx_ls_sigma_I()

setPdbx_ls_sigma_I

public void setPdbx_ls_sigma_I(java.lang.String pdbx_ls_sigma_I)

getPdbx_ls_sigma_F

public java.lang.String getPdbx_ls_sigma_F()

setPdbx_ls_sigma_F

public void setPdbx_ls_sigma_F(java.lang.String pdbx_ls_sigma_F)

getPdbx_data_cutoff_high_absF

public java.lang.String getPdbx_data_cutoff_high_absF()

setPdbx_data_cutoff_high_absF

public void setPdbx_data_cutoff_high_absF(java.lang.String pdbx_data_cutoff_high_absF)

getPdbx_data_cutoff_low_absF

public java.lang.String getPdbx_data_cutoff_low_absF()

setPdbx_data_cutoff_low_absF

public void setPdbx_data_cutoff_low_absF(java.lang.String pdbx_data_cutoff_low_absF)

getPdbx_data_cutoff_high_rms_absF

public java.lang.String getPdbx_data_cutoff_high_rms_absF()

setPdbx_data_cutoff_high_rms_absF

public void setPdbx_data_cutoff_high_rms_absF(java.lang.String pdbx_data_cutoff_high_rms_absF)

getLs_d_res_low

public java.lang.String getLs_d_res_low()

setLs_d_res_low

public void setLs_d_res_low(java.lang.String ls_d_res_low)

getLs_d_res_high

public java.lang.String getLs_d_res_high()

setLs_d_res_high

public void setLs_d_res_high(java.lang.String ls_d_res_high)

getLs_percent_reflns_obs

public java.lang.String getLs_percent_reflns_obs()

setLs_percent_reflns_obs

public void setLs_percent_reflns_obs(java.lang.String ls_percent_reflns_obs)

getLs_R_factor_obs

public java.lang.String getLs_R_factor_obs()

setLs_R_factor_obs

public void setLs_R_factor_obs(java.lang.String ls_R_factor_obs)

getLs_R_factor_all

public java.lang.String getLs_R_factor_all()

setLs_R_factor_all

public void setLs_R_factor_all(java.lang.String ls_R_factor_all)

getLs_R_factor_R_work

public java.lang.String getLs_R_factor_R_work()

setLs_R_factor_R_work

public void setLs_R_factor_R_work(java.lang.String ls_R_factor_R_work)

getLs_R_factor_R_free

public java.lang.String getLs_R_factor_R_free()

setLs_R_factor_R_free

public void setLs_R_factor_R_free(java.lang.String ls_R_factor_R_free)

getLs_R_factor_R_free_error

public java.lang.String getLs_R_factor_R_free_error()

setLs_R_factor_R_free_error

public void setLs_R_factor_R_free_error(java.lang.String ls_R_factor_R_free_error)

getLs_R_factor_R_free_error_details

public java.lang.String getLs_R_factor_R_free_error_details()

setLs_R_factor_R_free_error_details

public void setLs_R_factor_R_free_error_details(java.lang.String ls_R_factor_R_free_error_details)

getLs_percent_reflns_R_free

public java.lang.String getLs_percent_reflns_R_free()

setLs_percent_reflns_R_free

public void setLs_percent_reflns_R_free(java.lang.String ls_percent_reflns_R_free)

getLs_number_reflns_R_free

public java.lang.String getLs_number_reflns_R_free()

setLs_number_reflns_R_free

public void setLs_number_reflns_R_free(java.lang.String ls_number_reflns_R_free)

getLs_number_parameters

public java.lang.String getLs_number_parameters()

setLs_number_parameters

public void setLs_number_parameters(java.lang.String ls_number_parameters)

getLs_number_restraints

public java.lang.String getLs_number_restraints()

setLs_number_restraints

public void setLs_number_restraints(java.lang.String ls_number_restraints)

getOccupancy_min

public java.lang.String getOccupancy_min()

setOccupancy_min

public void setOccupancy_min(java.lang.String occupancy_min)

getOccupancy_max

public java.lang.String getOccupancy_max()

setOccupancy_max

public void setOccupancy_max(java.lang.String occupancy_max)

getB_iso_mean

public java.lang.String getB_iso_mean()

setB_iso_mean

public void setB_iso_mean(java.lang.String b_iso_mean)

getAniso_B

public java.lang.String[][] getAniso_B()

setAniso_B

public void setAniso_B(java.lang.String[][] aniso_B)

getSolvent_model_details

public java.lang.String getSolvent_model_details()

setSolvent_model_details

public void setSolvent_model_details(java.lang.String solvent_model_details)

getSolvent_model_param_ksol

public java.lang.String getSolvent_model_param_ksol()

setSolvent_model_param_ksol

public void setSolvent_model_param_ksol(java.lang.String solvent_model_param_ksol)

getSolvent_model_param_bsol

public java.lang.String getSolvent_model_param_bsol()

setSolvent_model_param_bsol

public void setSolvent_model_param_bsol(java.lang.String solvent_model_param_bsol)

getPdbx_ls_cross_valid_method

public java.lang.String getPdbx_ls_cross_valid_method()

setPdbx_ls_cross_valid_method

public void setPdbx_ls_cross_valid_method(java.lang.String pdbx_ls_cross_valid_method)

getDetails

public java.lang.String getDetails()

setDetails

public void setDetails(java.lang.String details)

getPdbx_starting_model

public java.lang.String getPdbx_starting_model()

setPdbx_starting_model

public void setPdbx_starting_model(java.lang.String pdbx_starting_model)

getPdbx_method_to_determine_struct

public java.lang.String getPdbx_method_to_determine_struct()

setPdbx_method_to_determine_struct

public void setPdbx_method_to_determine_struct(java.lang.String pdbx_method_to_determine_struct)

getPdbx_isotropic_thermal_model

public java.lang.String getPdbx_isotropic_thermal_model()

setPdbx_isotropic_thermal_model

public void setPdbx_isotropic_thermal_model(java.lang.String pdbx_isotropic_thermal_model)

getPdbx_stereochemistry_target_values

public java.lang.String getPdbx_stereochemistry_target_values()

setPdbx_stereochemistry_target_values

public void setPdbx_stereochemistry_target_values(java.lang.String pdbx_stereochemistry_target_values)

getPdbx_stereochem_target_val_spec_case

public java.lang.String getPdbx_stereochem_target_val_spec_case()

setPdbx_stereochem_target_val_spec_case

public void setPdbx_stereochem_target_val_spec_case(java.lang.String pdbx_stereochem_target_val_spec_case)

getPdbx_R_Free_selection_details

public java.lang.String getPdbx_R_Free_selection_details()

setPdbx_R_Free_selection_details

public void setPdbx_R_Free_selection_details(java.lang.String pdbx_R_Free_selection_details)

getPdbx_overall_ESU_R

public java.lang.String getPdbx_overall_ESU_R()

setPdbx_overall_ESU_R

public void setPdbx_overall_ESU_R(java.lang.String pdbx_overall_ESU_R)

getPdbx_overall_ESU_R_Free

public java.lang.String getPdbx_overall_ESU_R_Free()

setPdbx_overall_ESU_R_Free

public void setPdbx_overall_ESU_R_Free(java.lang.String pdbx_overall_ESU_R_Free)

getOverall_SU_ML

public java.lang.String getOverall_SU_ML()

setOverall_SU_ML

public void setOverall_SU_ML(java.lang.String overall_SU_ML)

getOverall_SU_B

public java.lang.String getOverall_SU_B()

setOverall_SU_B

public void setOverall_SU_B(java.lang.String overall_SU_B)

getPdbx_refine_id

public java.lang.String getPdbx_refine_id()

setPdbx_refine_id

public void setPdbx_refine_id(java.lang.String pdbx_refine_id)

getLs_redundancy_reflns_obs

public java.lang.String getLs_redundancy_reflns_obs()

setLs_redundancy_reflns_obs

public void setLs_redundancy_reflns_obs(java.lang.String ls_redundancy_reflns_obs)

getPdbx_overall_phase_error

public java.lang.String getPdbx_overall_phase_error()

setPdbx_overall_phase_error

public void setPdbx_overall_phase_error(java.lang.String pdbx_overall_phase_error)

getB_iso_min

public java.lang.String getB_iso_min()

setB_iso_min

public void setB_iso_min(java.lang.String b_iso_min)

getB_iso_max

public java.lang.String getB_iso_max()

setB_iso_max

public void setB_iso_max(java.lang.String b_iso_max)

getCorrelation_coeff_Fo_to_Fc

public java.lang.String getCorrelation_coeff_Fo_to_Fc()

setCorrelation_coeff_Fo_to_Fc

public void setCorrelation_coeff_Fo_to_Fc(java.lang.String correlation_coeff_Fo_to_Fc)

getCorrelation_coeff_Fo_to_Fc_free

public java.lang.String getCorrelation_coeff_Fo_to_Fc_free()

setCorrelation_coeff_Fo_to_Fc_free

public void setCorrelation_coeff_Fo_to_Fc_free(java.lang.String correlation_coeff_Fo_to_Fc_free)

getPdbx_solvent_vdw_probe_radii

public java.lang.String getPdbx_solvent_vdw_probe_radii()

setPdbx_solvent_vdw_probe_radii

public void setPdbx_solvent_vdw_probe_radii(java.lang.String pdbx_solvent_vdw_probe_radii)

getPdbx_solvent_ion_probe_radii

public java.lang.String getPdbx_solvent_ion_probe_radii()

setPdbx_solvent_ion_probe_radii

public void setPdbx_solvent_ion_probe_radii(java.lang.String pdbx_solvent_ion_probe_radii)

getPdbx_solvent_shrinkage_radii

public java.lang.String getPdbx_solvent_shrinkage_radii()

setPdbx_solvent_shrinkage_radii

public void setPdbx_solvent_shrinkage_radii(java.lang.String pdbx_solvent_shrinkage_radii)

getOverall_SU_R_Cruickshank_DPI

public java.lang.String getOverall_SU_R_Cruickshank_DPI()

setOverall_SU_R_Cruickshank_DPI

public void setOverall_SU_R_Cruickshank_DPI(java.lang.String overall_SU_R_Cruickshank_DPI)

getOverall_SU_R_free

public java.lang.String getOverall_SU_R_free()

setOverall_SU_R_free

public void setOverall_SU_R_free(java.lang.String overall_SU_R_free)

getLs_wR_factor_R_free

public java.lang.String getLs_wR_factor_R_free()

setLs_wR_factor_R_free

public void setLs_wR_factor_R_free(java.lang.String ls_wR_factor_R_free)

getLs_wR_factor_R_work

public java.lang.String getLs_wR_factor_R_work()

setLs_wR_factor_R_work

public void setLs_wR_factor_R_work(java.lang.String ls_wR_factor_R_work)

getOverall_FOM_free_R_set

public java.lang.String getOverall_FOM_free_R_set()

setOverall_FOM_free_R_set

public void setOverall_FOM_free_R_set(java.lang.String overall_FOM_free_R_set)

getOverall_FOM_work_R_set

public java.lang.String getOverall_FOM_work_R_set()

setOverall_FOM_work_R_set

public void setOverall_FOM_work_R_set(java.lang.String overall_FOM_work_R_set)