|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectorg.biojava.bio.seq.io.GenbankFormat
org.biojava.bio.seq.io.GenpeptFormat
public class GenpeptFormat
This class is necessitated by the deprecation of writeSequence(Sequence seq, String format, PrintStream os) method. Now the format object must be intimately associated to the format it is handling.
Field Summary |
---|
Fields inherited from class org.biojava.bio.seq.io.GenbankFormat |
---|
ACCESSION_TAG, AUTHORS_TAG, BASE_COUNT_TAG, CIRCULAR_TAG, COMMENT_TAG, COORDINATE_TAG, DATE_TAG, DEFAULT, DEFINITION_TAG, DIVISION_TAG, END_SEQUENCE_TAG, FEATURE_FLAG, FEATURE_LINE_PREFIX, FEATURE_TAG, GI_TAG, JOURNAL_TAG, KEYWORDS_TAG, LOCUS_TAG, MEDLINE_TAG, ORGANISM_TAG, PUBMED_TAG, REF_ACCESSION_TAG, REFERENCE_TAG, SIZE_TAG, SOURCE_TAG, START_SEQUENCE_TAG, STRAND_NUMBER_TAG, TITLE_TAG, TYPE_TAG, VERSION_TAG |
Constructor Summary | |
---|---|
GenpeptFormat()
Deprecated. |
Method Summary | |
---|---|
java.lang.String |
getDefaultFormat()
Deprecated. getDefaultFormat returns the String identifier for
the default format. |
Methods inherited from class org.biojava.bio.seq.io.GenbankFormat |
---|
addParseErrorListener, BadLineParsed, getElideSymbols, notifyParseErrorEvent, readSequence, removeParseErrorListener, setElideSymbols, writeSequence, writeSequence |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
---|
public GenpeptFormat()
Method Detail |
---|
public java.lang.String getDefaultFormat()
GenbankFormat
getDefaultFormat
returns the String identifier for
the default format.
getDefaultFormat
in interface SequenceFormat
getDefaultFormat
in class GenbankFormat
String
.
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |