Uses of Class
org.biojava.bio.symbol.RangeLocation

Packages that use RangeLocation
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
org.biojava.bio.gui.sequence.tracklayout Classes for the handling of the layout of a WrappedSequencePanel. 
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
org.biojava.bio.seq.io.game Event-driven parsing system for the Gene Annotation Markup Elements (GAME). 
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
 

Uses of RangeLocation in org.biojava.bio.gui.sequence
 

Methods in org.biojava.bio.gui.sequence that return RangeLocation
 RangeLocation HeadlessRenderContext.getRange()
           
 RangeLocation SequencePanelWrapper.getRange()
           
 RangeLocation SubSequenceRenderContext.getRange()
           
 RangeLocation SequencePoster.getRange()
          Deprecated.  
 RangeLocation SequencePanel.getRange()
           
 RangeLocation SequenceRenderContext.getRange()
          The range of the SymbolList to render.
 RangeLocation PairwiseSequencePanel.getRange()
          getRange returns a RangeLocation representing the region of the sequence currently being rendered.
 RangeLocation TranslatedSequencePanel.getRange()
          getRange returns a RangeLocation representing the region of the sequence currently being rendered.
 RangeLocation SubPairwiseRenderContext.getRange()
           
 RangeLocation PairwiseSequencePanel.getSecondaryRange()
          getSecondaryRange returns a RangeLocation representing the region of the secondary sequence currently being rendered.
 RangeLocation SubPairwiseRenderContext.getSecondaryRange()
           
 RangeLocation PairwiseRenderContext.getSecondaryRange()
          getSecondaryRange returns the range of the secondary sequence currently rendered.
 RangeLocation SequencePoster.getVisibleRange()
          Deprecated.  
 

Methods in org.biojava.bio.gui.sequence with parameters of type RangeLocation
protected  SequenceRenderContext GappedRenderer.makeContext(SequenceRenderContext src, RangeLocation loc)
           
 void SequencePanelWrapper.setRange(RangeLocation loc)
           
 void SequencePanel.setRange(RangeLocation range)
           
 

Constructors in org.biojava.bio.gui.sequence with parameters of type RangeLocation
HeadlessRenderContext(Sequence seq, RangeLocation range, int width)
           
SubPairwiseRenderContext(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange)
          Creates a new SubPairwiseRenderContext.
SubSequenceRenderContext(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range)
           
SubSequenceRenderContext(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range, int symOffset)
           
 

Uses of RangeLocation in org.biojava.bio.gui.sequence.tracklayout
 

Methods in org.biojava.bio.gui.sequence.tracklayout that return RangeLocation
 RangeLocation[] SimpleTrackLayout.getRanges()
           
 RangeLocation[] UserDefinedTrackLayout.getRanges()
           
 RangeLocation[] TrackLayout.getRanges()
           
 

Methods in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocation
 void SimpleTrackLayout.setRange(RangeLocation loc)
           
 void UserDefinedTrackLayout.setRange(RangeLocation loc)
           
 void TrackLayout.setRange(RangeLocation loc)
           
 

Constructors in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocation
UserDefinedTrackLayout(RangeLocation[] ranges)
           
 

Uses of RangeLocation in org.biojava.bio.seq
 

Methods in org.biojava.bio.seq with parameters of type RangeLocation
static Sequence SequenceTools.maskSequence(Sequence seq, RangeLocation loc)
          Mask of a sequence.
 

Uses of RangeLocation in org.biojava.bio.seq.io.game
 

Methods in org.biojava.bio.seq.io.game with parameters of type RangeLocation
 void GAMETranscriptCallbackItf.reportExon(RangeLocation range, StrandedFeature.Strand strand)
          Allows nesting class that manages a transcript template to gain information about its extent from nested elements that represent exons.
 void GAMEFeatureSetHandler.reportExon(RangeLocation range, StrandedFeature.Strand strand)
           
 

Uses of RangeLocation in org.biojava.bio.symbol
 

Subclasses of RangeLocation in org.biojava.bio.symbol
 class MergeLocation
          Produced by LocationTools as a result of union operations.