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Packages that use FastqBuilder | |
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org.biojava.bio.program.fastq | FASTQ and variants sequence format IO. |
Uses of FastqBuilder in org.biojava.bio.program.fastq |
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Methods in org.biojava.bio.program.fastq that return FastqBuilder | |
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FastqBuilder |
FastqBuilder.appendQuality(java.lang.String quality)
Return this FASTQ formatted sequence builder configured with the specified quality scores appended to its current quality scores. |
FastqBuilder |
FastqBuilder.appendSequence(java.lang.String sequence)
Return this FASTQ formatted sequence builder configured with the specified sequence appended to its current sequence. |
FastqBuilder |
FastqBuilder.withDescription(java.lang.String description)
Return this FASTQ formatted sequence builder configured with the specified description. |
FastqBuilder |
FastqBuilder.withQuality(java.lang.String quality)
Return this FASTQ formatted sequence builder configured with the specified quality scores. |
FastqBuilder |
FastqBuilder.withSequence(java.lang.String sequence)
Return this FASTQ formatted sequence builder configured with the specified sequence. |
FastqBuilder |
FastqBuilder.withVariant(FastqVariant variant)
Return this FASTQ formatted sequence builder configured with the specified FASTQ sequence format variant. |
Methods in org.biojava.bio.program.fastq with parameters of type FastqBuilder | |
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protected void |
SolexaFastqReader.validateDescription(FastqBuilder builder,
java.lang.String description,
int lineNumber)
Validate the specified description. |
protected void |
SangerFastqReader.validateDescription(FastqBuilder builder,
java.lang.String description,
int lineNumber)
Validate the specified description. |
protected void |
IlluminaFastqReader.validateDescription(FastqBuilder builder,
java.lang.String description,
int lineNumber)
Validate the specified description. |
protected void |
SolexaFastqReader.validateQuality(FastqBuilder builder,
java.lang.String quality,
int lineNumber)
Validate the specified quality scores. |
protected void |
SangerFastqReader.validateQuality(FastqBuilder builder,
java.lang.String quality,
int lineNumber)
Validate the specified quality scores. |
protected void |
IlluminaFastqReader.validateQuality(FastqBuilder builder,
java.lang.String quality,
int lineNumber)
Validate the specified quality scores. |
protected void |
SolexaFastqReader.validateRepeatDescription(FastqBuilder builder,
java.lang.String repeatDescription,
int lineNumber)
Validate the specified repeat description. |
protected void |
SangerFastqReader.validateRepeatDescription(FastqBuilder builder,
java.lang.String repeatDescription,
int lineNumber)
Validate the specified repeat description. |
protected void |
IlluminaFastqReader.validateRepeatDescription(FastqBuilder builder,
java.lang.String repeatDescription,
int lineNumber)
Validate the specified repeat description. |
protected void |
SolexaFastqReader.validateSequence(FastqBuilder builder,
java.lang.String sequence,
int lineNumber)
Validate the specified sequence. |
protected void |
SangerFastqReader.validateSequence(FastqBuilder builder,
java.lang.String sequence,
int lineNumber)
Validate the specified sequence. |
protected void |
IlluminaFastqReader.validateSequence(FastqBuilder builder,
java.lang.String sequence,
int lineNumber)
Validate the specified sequence. |
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