org.biojava.bio.seq.db
Class SwissprotSequenceDB
java.lang.Object
org.biojava.bio.seq.db.SwissprotSequenceDB
public class SwissprotSequenceDB
- extends java.lang.Object
This class contains functions accessing sequences in swiss-prot.
- Author:
- Lei Lai, Matthew Pocock
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
SwissprotSequenceDB
public SwissprotSequenceDB()
getSequenceFormat
protected SequenceFormat getSequenceFormat()
getAlphabet
protected Alphabet getAlphabet()
getAddress
protected java.net.URL getAddress(java.lang.String id)
throws java.net.MalformedURLException
- Throws:
java.net.MalformedURLException
getName
public java.lang.String getName()
getSequence
public Sequence getSequence(java.lang.String id)
throws BioException
- Throws:
BioException
checkIOException
public boolean checkIOException()