Uses of Interface
org.biojava.bio.program.ssaha.DataStore

Packages that use DataStore
org.biojava.bio.program.ssaha SSAHA sequence searching API. 
 

Uses of DataStore in org.biojava.bio.program.ssaha
 

Classes in org.biojava.bio.program.ssaha that implement DataStore
 class CompactedDataStore
          An implementation of DataStore that will map onto a file using the NIO constructs.
 

Methods in org.biojava.bio.program.ssaha that return DataStore
 DataStore MappedDataStoreFactory.buildDataStore(java.io.File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold)
           
 DataStore DataStoreFactory.buildDataStore(java.io.File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold)
          Build a new DataStore.
 DataStore CompactedDataStoreFactory.buildDataStore(java.io.File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold)
           
 DataStore NIODataStoreFactory.buildDataStore(java.io.File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold)
           
 DataStore CompactedDataStoreFactory.buildDataStore(java.io.File storeFile, SequenceStreamer streamer, Packing packing, int wordLength, int stepSize, int threshold)
           
 DataStore MappedDataStoreFactory.getDataStore(java.io.File storeFile)
           
 DataStore DataStoreFactory.getDataStore(java.io.File storeFile)
          Get a pre-built data store associated with a file.
 DataStore CompactedDataStoreFactory.getDataStore(java.io.File storeFile)
           
 DataStore NIODataStoreFactory.getDataStore(java.io.File storeFile)