Uses of Class
org.biojava.bio.program.gff.IgnoreRecordException

Packages that use IgnoreRecordException
org.biojava.bio.program.gff GFF manipulation. 
org.biojava.bio.program.gff3 Support for reading and writing GFF3. 
 

Uses of IgnoreRecordException in org.biojava.bio.program.gff
 

Methods in org.biojava.bio.program.gff that throw IgnoreRecordException
protected  GFFRecord GFFParser.createRecord(GFFDocumentHandler handler, java.util.List aList, java.lang.String rest, java.lang.String comment)
          Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.
 int GFFErrorHandler.invalidEnd(java.lang.String token)
          The `end' field of the GFF entry was not a valid value.
 int GFFErrorHandler.SkipRecordErrorHandler.invalidEnd(java.lang.String token)
           
 int GFFErrorHandler.invalidFrame(java.lang.String token)
          The `frame' field of the GFF entry was not a valid value.
 int GFFErrorHandler.SkipRecordErrorHandler.invalidFrame(java.lang.String token)
           
 double GFFErrorHandler.invalidScore(java.lang.String token)
          The `score' field of the GFF entry was not a valid value.
 double GFFErrorHandler.SkipRecordErrorHandler.invalidScore(java.lang.String token)
           
 int GFFErrorHandler.invalidStart(java.lang.String token)
          The `start' field of the GFF entry was not a valid value.
 int GFFErrorHandler.SkipRecordErrorHandler.invalidStart(java.lang.String token)
           
 StrandedFeature.Strand GFFErrorHandler.invalidStrand(java.lang.String token)
          The `strand' field of the GFF entry was not a valid value.
 StrandedFeature.Strand GFFErrorHandler.SkipRecordErrorHandler.invalidStrand(java.lang.String token)
           
 

Uses of IgnoreRecordException in org.biojava.bio.program.gff3
 

Methods in org.biojava.bio.program.gff3 that throw IgnoreRecordException
protected  GFF3Record GFF3Parser.createRecord(GFF3DocumentHandler handler, java.util.List aList, java.lang.String rest, java.lang.String comment, Ontology ontology, Ontology fallBack)
          Actually turns a list of tokens, some value string and a comment into a GFF3Record and informs handler.