org.biojava.bio.program.fastq
Class Fastq

java.lang.Object
  extended by org.biojava.bio.program.fastq.Fastq

public final class Fastq
extends java.lang.Object

FASTQ formatted sequence.


Method Summary
 java.lang.String getDescription()
          Return the description of this FASTQ formatted sequence.
 java.lang.String getQuality()
          Return the quality scores for this FASTQ formatted sequence.
 java.lang.String getSequence()
          Return the sequence for this FASTQ formatted sequence.
 FastqVariant getVariant()
          Return the FASTQ sequence format variant for this FASTQ formatted sequence.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Method Detail

getDescription

public java.lang.String getDescription()
Return the description of this FASTQ formatted sequence. The description will not be null.

Returns:
the description of this FASTQ formatted sequence

getSequence

public java.lang.String getSequence()
Return the sequence for this FASTQ formatted sequence. The sequence will not be null.

Returns:
the sequence for this FASTQ formatted sequence

getQuality

public java.lang.String getQuality()
Return the quality scores for this FASTQ formatted sequence. The quality scores will not be null.

Returns:
the quality scores for this FASTQ formatted sequence

getVariant

public FastqVariant getVariant()
Return the FASTQ sequence format variant for this FASTQ formatted sequence. The FASTQ sequence format variant will not be null.

Returns:
the FASTQ sequence format variant for this FASTQ formatted sequence