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Packages that use OrderNDistribution | |
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org.biojava.bio.dist | Probability distributions over Alphabets. |
org.biojavax.ga.functions | GA functions |
org.biojavax.ga.util | Utility functions and helper classes |
Uses of OrderNDistribution in org.biojava.bio.dist |
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Classes in org.biojava.bio.dist that implement OrderNDistribution | |
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class |
AbstractOrderNDistribution
Simple base class for OrderNDistributions. |
Methods in org.biojava.bio.dist with parameters of type OrderNDistribution | |
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protected static Sequence |
DistributionTools.generateOrderNSequence(java.lang.String name,
OrderNDistribution d,
int length)
Deprecated. use generateSequence() or generateSymbolList() instead. |
Uses of OrderNDistribution in org.biojavax.ga.functions |
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Methods in org.biojavax.ga.functions that return OrderNDistribution | |
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OrderNDistribution |
AbstractMutationFunction.getMutationSpectrum()
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OrderNDistribution |
MutationFunction.getMutationSpectrum()
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OrderNDistribution |
MutationFunction.NoMutation.getMutationSpectrum()
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Methods in org.biojavax.ga.functions with parameters of type OrderNDistribution | |
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void |
AbstractMutationFunction.setMutationSpectrum(OrderNDistribution mutationSpectrum)
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void |
MutationFunction.setMutationSpectrum(OrderNDistribution mutationSpectrum)
Sets the Distribution of Symbols that will be selected
from when a mutation occurs. |
void |
MutationFunction.NoMutation.setMutationSpectrum(OrderNDistribution odn)
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Uses of OrderNDistribution in org.biojavax.ga.util |
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Methods in org.biojavax.ga.util that return OrderNDistribution | |
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static OrderNDistribution |
GATools.standardMutationDistribution(FiniteAlphabet a)
Makes a mutation Distribution where the probability
of a Symbol being mutated to itself is zero and the
probability of it being changed to any other Symbol in
the Alphabet a is 1.0 / (a.size() - 1.0) |
static OrderNDistribution |
GATools.uniformMutationDistribution(FiniteAlphabet a)
Makes a 1st order distribution which is infact uniform (equivalent to a uniform zero order distribution). |
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