OpenMS  2.4.0
TransitionPQPFile.h
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31 // $Maintainer: George Rosenberger $
32 // $Authors: George Rosenberger, Hannes Roest $
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34 
35 #pragma once
36 
38 
39 #include <boost/range/algorithm.hpp>
40 #include <boost/range/algorithm_ext/erase.hpp>
41 #include <sqlite3.h>
42 #include <iostream>
43 
44 namespace OpenMS
45 {
46 
55  class OPENMS_DLLAPI TransitionPQPFile :
56  public TransitionTSVFile
57  {
58 
59 private:
60 
68  void readPQPInput_(const char* filename, std::vector<TSVTransition>& transition_list, bool legacy_traml_id = false);
69 
75  void writePQPOutput_(const char* filename, OpenMS::TargetedExperiment& targeted_exp);
76 
77 public:
78 
82 
84  ~TransitionPQPFile() override;
86 
93  void convertTargetedExperimentToPQP(const char* filename, OpenMS::TargetedExperiment& targeted_exp);
94 
102  void convertPQPToTargetedExperiment(const char* filename, OpenMS::TargetedExperiment& targeted_exp, bool legacy_traml_id = false);
103 
111  void convertPQPToTargetedExperiment(const char* filename, OpenSwath::LightTargetedExperiment& targeted_exp, bool legacy_traml_id = false);
112 
113  };
114 }
115 
116 
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
This class can convert TraML and TSV files into each other.
Definition: TransitionTSVFile.h:80
This class can convert TraML and PQP files into each other.
Definition: TransitionPQPFile.h:55
A description of a targeted experiment containing precursor and production ions.
Definition: TargetedExperiment.h:61
Definition: TransitionExperiment.h:206