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OpenMS
2.4.0
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If you are using a Debian-based Linux we suggest to use the deb-package provided by us in our archive. It is most easily installed with
To ensure the tool functionality please add the OPENMS_DATA_PATH variable to your environment as follows (you will get an error advising you this when executing a tool):
Executables for THIRDPARTY applications can be found in:
Add the folders inside to your PATH for a convenient use of our adapters.
Currently there are also packaged versions of OpenMS provided for Fedora, OpenSUSE, Debian, and Ubuntu available in the corresponding package managers of these distributions (they might require a lookup in thirdparty "science" repositories). For other GNU/Linux distributions or to obtain the most recent version of the library you need to build your own OpenMS.
Get the source code from Github and see Building OpenMS on GNU/Linux on how to build OpenMS.
We are also constantly updating our Docker support. Images can be obtained via <a href="https://hub.docker.com/u/openms/>Dockerhub</a> and <a href="http://biocontainers.pro/">Biocontainers repositories. Depending on what you want to do, images can be pulled via one of the following commands
once you have successfully installed docker (see Docker documentation).
More dockerfiles to build different kinds of images (corresponding to build instructions, e.g. on ArchLinux) can be found on our Github under: https://github.com/OpenMS/dockerfiles