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void | convertTargetedExperimentToPQP (const char *filename, OpenMS::TargetedExperiment &targeted_exp) |
| Write out a targeted experiment (TraML structure) into a PQP file. More...
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void | convertPQPToTargetedExperiment (const char *filename, OpenMS::TargetedExperiment &targeted_exp, bool legacy_traml_id=false) |
| Read in a PQP file and construct a targeted experiment (TraML structure) More...
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void | convertPQPToTargetedExperiment (const char *filename, OpenSwath::LightTargetedExperiment &targeted_exp, bool legacy_traml_id=false) |
| Read in a PQP file and construct a targeted experiment (Light transition structure) More...
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| TransitionPQPFile () |
| Constructor. More...
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| ~TransitionPQPFile () override |
| Destructor. More...
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void | convertTargetedExperimentToTSV (const char *filename, OpenMS::TargetedExperiment &targeted_exp) |
| Write out a targeted experiment (TraML structure) into a tsv file. More...
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void | convertTSVToTargetedExperiment (const char *filename, FileTypes::Type filetype, OpenMS::TargetedExperiment &targeted_exp) |
| Read in a tsv/mrm file and construct a targeted experiment (TraML structure) More...
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void | convertTSVToTargetedExperiment (const char *filename, FileTypes::Type filetype, OpenSwath::LightTargetedExperiment &targeted_exp) |
| Read in a tsv file and construct a targeted experiment (Light transition structure) More...
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void | validateTargetedExperiment (const OpenMS::TargetedExperiment &targeted_exp) |
| Validate a TargetedExperiment (check that all ids are unique) More...
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| TransitionTSVFile () |
| Constructor. More...
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| ~TransitionTSVFile () override |
| Destructor. More...
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| ProgressLogger () |
| Constructor. More...
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| ~ProgressLogger () |
| Destructor. More...
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| ProgressLogger (const ProgressLogger &other) |
| Copy constructor. More...
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ProgressLogger & | operator= (const ProgressLogger &other) |
| Assignment Operator. More...
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void | setLogType (LogType type) const |
| Sets the progress log that should be used. The default type is NONE! More...
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LogType | getLogType () const |
| Returns the type of progress log being used. More...
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void | startProgress (SignedSize begin, SignedSize end, const String &label) const |
| Initializes the progress display. More...
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void | setProgress (SignedSize value) const |
| Sets the current progress. More...
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void | endProgress () const |
| Ends the progress display. More...
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void | nextProgress () const |
| increment progress by 1 (according to range begin-end) More...
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Public Member Functions inherited from DefaultParamHandler |
| DefaultParamHandler (const String &name) |
| Constructor with name that is displayed in error messages. More...
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| DefaultParamHandler (const DefaultParamHandler &rhs) |
| Copy constructor. More...
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virtual | ~DefaultParamHandler () |
| Destructor. More...
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virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
| Assignment operator. More...
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virtual bool | operator== (const DefaultParamHandler &rhs) const |
| Equality operator. More...
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void | setParameters (const Param ¶m) |
| Sets the parameters. More...
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const Param & | getParameters () const |
| Non-mutable access to the parameters. More...
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const Param & | getDefaults () const |
| Non-mutable access to the default parameters. More...
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const String & | getName () const |
| Non-mutable access to the name. More...
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void | setName (const String &name) |
| Mutable access to the name. More...
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const std::vector< String > & | getSubsections () const |
| Non-mutable access to the registered subsections. More...
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This class can convert TraML and PQP files into each other.
The PQP files are SQLite databases consisting of several tables representing the data contained in TraML files.