Source code for ase.dft.kpoints

from __future__ import division
from ase.utils import basestring
import re
import warnings
from math import sin, cos

import numpy as np

from ase.utils import jsonable
from ase.cell import Cell
from ase.geometry import cell_to_cellpar, crystal_structure_from_cell


[docs]def monkhorst_pack(size): """Construct a uniform sampling of k-space of given size.""" if np.less_equal(size, 0).any(): raise ValueError('Illegal size: %s' % list(size)) kpts = np.indices(size).transpose((1, 2, 3, 0)).reshape((-1, 3)) return (kpts + 0.5) / size - 0.5
[docs]def get_monkhorst_pack_size_and_offset(kpts): """Find Monkhorst-Pack size and offset. Returns (size, offset), where:: kpts = monkhorst_pack(size) + offset. The set of k-points must not have been symmetry reduced.""" if len(kpts) == 1: return np.ones(3, int), np.array(kpts[0], dtype=float) size = np.zeros(3, int) for c in range(3): # Determine increment between k-points along current axis delta = max(np.diff(np.sort(kpts[:, c]))) # Determine number of k-points as inverse of distance between kpoints if delta > 1e-8: size[c] = int(round(1.0 / delta)) else: size[c] = 1 if size.prod() == len(kpts): kpts0 = monkhorst_pack(size) offsets = kpts - kpts0 # All offsets must be identical: if (offsets.ptp(axis=0) < 1e-9).all(): return size, offsets[0].copy() raise ValueError('Not an ASE-style Monkhorst-Pack grid!')
def get_monkhorst_shape(kpts): warnings.warn('Use get_monkhorst_pack_size_and_offset()[0] instead.') return get_monkhorst_pack_size_and_offset(kpts)[0] def kpoint_convert(cell_cv, skpts_kc=None, ckpts_kv=None): """Convert k-points between scaled and cartesian coordinates. Given the atomic unit cell, and either the scaled or cartesian k-point coordinates, the other is determined. The k-point arrays can be either a single point, or a list of points, i.e. the dimension k can be empty or multidimensional. """ if ckpts_kv is None: icell_cv = 2 * np.pi * np.linalg.pinv(cell_cv).T return np.dot(skpts_kc, icell_cv) elif skpts_kc is None: return np.dot(ckpts_kv, cell_cv.T) / (2 * np.pi) else: raise KeyError('Either scaled or cartesian coordinates must be given.')
[docs]def parse_path_string(s): """Parse compact string representation of BZ path. A path string can have several non-connected sections separated by commas. The return value is a list of sections where each section is a list of labels. Examples: >>> parse_path_string('GX') [['G', 'X']] >>> parse_path_string('GX,M1A') [['G', 'X'], ['M1', 'A']] """ paths = [] for path in s.split(','): names = [name for name in re.split(r'([A-Z][a-z0-9]*)', path) if name] paths.append(names) return paths
def resolve_kpt_path_string(path, special_points): paths = parse_path_string(path) coords = [np.array([special_points[sym] for sym in subpath]).reshape(-1, 3) for subpath in paths] return paths, coords def resolve_custom_points(pathspec, special_points, eps): """Resolve a path specification into a string. The path specification is a list path segments, each segment being a kpoint label or kpoint coordinate, or a single such segment. Return a string representing the same path. Generic kpoint labels are generated dynamically as necessary, updating the special_point dictionary if necessary. The tolerance eps is used to see whether coordinates are close enough to a special point to deserve being labelled as such.""" # This should really run on Cartesian coordinates but we'll probably # be lazy and call it on scaled ones. if len(pathspec) == 0: return '' nested_format = True for element in pathspec: if len(element) == 3 and np.isscalar(element[0]): nested_format = False break if not nested_format: pathspec = [pathspec] # Now format is nested. def name_generator(): counter = 0 while True: name = 'Kpt{}'.format(counter) yield name counter += 1 custom_names = name_generator() labelseq = [] for segment in pathspec: for kpt in segment: if isinstance(kpt, str): if kpt not in special_points: raise KeyError('No kpoint "{}" among "{}"'.format(kpt), ''.join(special_points)) labelseq.append(kpt) continue kpt = np.asarray(kpt, float) for key, val in special_points.items(): if np.abs(kpt - val).max() < eps: labelseq.append(key) break # Already present else: # New special point - search for name we haven't used yet: name = next(custom_names) while name in special_points: name = next(custom_names) special_points[name] = kpt labelseq.append(name) labelseq.append(',') last = labelseq.pop() assert last == ',' return ''.join(labelseq)
[docs]@jsonable('bandpath') class BandPath: """Represents a Brillouin zone path or bandpath. A band path has a unit cell, a path specification, special points, and interpolated k-points. Band paths are typically created indirectly using the :class:`~ase.geometry.Cell` or :class:`~ase.lattice.BravaisLattice` classes: >>> from ase.lattice import CUB >>> path = CUB(3).bandpath() >>> path BandPath(path='GXMGRX,MR', cell=[3x3], special_points={GMRX}, kpts=[40x3]) Band paths support JSON I/O: >>> from ase.io.jsonio import read_json >>> path.write('mybandpath.json') >>> read_json('mybandpath.json') BandPath(path='GXMGRX,MR', cell=[3x3], special_points={GMRX}, kpts=[40x3]) """ def __init__(self, cell, kpts=None, special_points=None, path=None): if kpts is None: kpts = np.empty((0, 3)) if special_points is None: special_points = {} else: special_points = dict(special_points) if path is None: path = '' self.cell = cell = Cell.new(cell) assert cell.shape == (3, 3) assert kpts.ndim == 2 and kpts.shape[1] == 3 self.icell = self.cell.reciprocal() self.kpts = kpts self.special_points = special_points assert isinstance(path, str) self.path = path
[docs] def transform(self, op): """Apply 3x3 matrix to this BandPath and return new BandPath. This is useful for converting the band path to another cell. The operation will typically be a permutation/flipping established by a function such as Niggli reduction.""" # XXX acceptable operations are probably only those # who come from Niggli reductions (permutations etc.) # # We should insert a check. # I wonder which operations are valid? They won't be valid # if they change lengths, volume etc. special_points = {} for name, value in self.special_points.items(): special_points[name] = value @ op return BandPath(op.T @ self.cell, kpts=self.kpts @ op, special_points=special_points, path=self.path)
def todict(self): return {'kpts': self.kpts, 'special_points': self.special_points, 'labelseq': self.path, 'cell': self.cell}
[docs] def interpolate(self, path=None, npoints=None, special_points=None, density=None): """Create new bandpath, (re-)interpolating kpoints from this one.""" if path is None: path = self.path special_points = {} if special_points is None else dict(special_points) special_points.update(self.special_points) pathnames, pathcoords = resolve_kpt_path_string(path, special_points) kpts, x, X = paths2kpts(pathcoords, self.cell, npoints, density) return BandPath(self.cell, kpts, path=path, special_points=special_points)
def _scale(self, coords): return np.dot(coords, self.icell) def __repr__(self): return ('{}(path={}, cell=[3x3], special_points={{{}}}, kpts=[{}x3])' .format(self.__class__.__name__, repr(self.path), ''.join(sorted(self.special_points)), len(self.kpts)))
[docs] def cartesian_kpts(self): """Get Cartesian kpoints from this bandpath.""" return self._scale(self.kpts)
def __iter__(self): """XXX Compatibility hack for bandpath() function. bandpath() now returns a BandPath object, which is a Good Thing. However it used to return a tuple of (kpts, x_axis, special_x_coords), and people would use tuple unpacking for those. This function makes tuple unpacking work in the same way. It will be removed in the future. """ import warnings warnings.warn('Please do not use (kpts, x, X) = bandpath(...). ' 'Use path = bandpath(...) and then kpts = path.kpts and ' '(x, X, labels) = path.get_linear_kpoint_axis().') yield self.kpts x, xspecial, _ = labels_from_kpts(self.kpts, self.cell, special_points=self.special_points) yield x yield xspecial def __getitem__(self, index): # Temp compatibility stuff, see __iter__ return tuple(self)[index]
[docs] def get_linear_kpoint_axis(self, eps=1e-5): """Define x axis suitable for plotting a band structure. See :func:`ase.dft.kpoints.labels_from_kpts`.""" return labels_from_kpts(self.kpts, self.cell, eps=eps, special_points=self.special_points)
[docs] def plot(self, dimension=3, **plotkwargs): """Visualize this bandpath. Plots the irreducible Brillouin zone and this bandpath.""" import ase.dft.bz as bz special_points = self.special_points labelseq, coords = resolve_kpt_path_string(self.path, special_points) paths = [] points_already_plotted = set() for subpath_labels, subpath_coords in zip(labelseq, coords): subpath_coords = np.array(subpath_coords) points_already_plotted.update(subpath_labels) paths.append((subpath_labels, self._scale(subpath_coords))) # Add each special point as a single-point subpath if they were # not plotted already: for label, point in special_points.items(): if label not in points_already_plotted: paths.append(([label], [self._scale(point)])) kw = {'vectors': True} kw.update(plotkwargs) return bz.bz_plot(self.cell, paths=paths, points=self.cartesian_kpts(), pointstyle={'marker': '.'}, **kw)
[docs] def free_electron_band_structure(self, **kwargs): """Return band structure of free electrons for this bandpath. This is for mostly testing.""" from ase import Atoms from ase.calculators.test import FreeElectrons from ase.dft.band_structure import calculate_band_structure atoms = Atoms(cell=self.cell, pbc=True) atoms.calc = FreeElectrons(**kwargs) bs = calculate_band_structure(atoms, path=self) return bs
[docs]def bandpath(path, cell, npoints=None, density=None, special_points=None, eps=2e-4): """Make a list of kpoints defining the path between the given points. path: list or str Can be: * a string that parse_path_string() understands: 'GXL' * a list of BZ points: [(0, 0, 0), (0.5, 0, 0)] * or several lists of BZ points if the the path is not continuous. cell: 3x3 Unit cell of the atoms. npoints: int Length of the output kpts list. If too small, at least the beginning and ending point of each path segment will be used. If None (default), it will be calculated using the supplied density or a default one. density: float k-points per A⁻¹ on the output kpts list. If npoints is None, the number of k-points in the output list will be: npoints = density * path total length (in Angstroms). If density is None (default), use 5 k-points per A⁻¹. If the calculated npoints value is less than 50, a mimimum value of 50 will be used. special_points: dict or None Dictionary mapping names to special points. If None, the special points will be derived from the cell. eps: float Precision used to identify Bravais lattice, deducing special points. You may define npoints or density but not both. Return a :class:`~ase.dft.kpoints.BandPath` object.""" cell = Cell.ascell(cell) return cell.bandpath(path, npoints=npoints, density=density, special_points=special_points, eps=eps) # XXX old code for bandpath() function, should be removed once we # weed out any trouble if isinstance(path, basestring): # XXX we need to update this so we use the new and more complete # cell classification stuff lattice = None if special_points is None: cell = Cell.ascell(cell) cellinfo = get_cellinfo(cell) special_points = cellinfo.special_points lattice = cellinfo.lattice paths = [] for names in parse_path_string(path): for name in names: if name not in special_points: msg = ('K-point label {} not included in {} special ' 'points. Valid labels are: {}' .format(name, lattice or 'custom dictionary of', ', '.join(sorted(special_points)))) raise ValueError(msg) paths.append([special_points[name] for name in names]) elif np.array(path[0]).ndim == 1: paths = [path] else: paths = path kpts, x, X = paths2kpts(paths, cell, npoints, density) return BandPath(cell, kpts=kpts, special_points=special_points)
DEFAULT_KPTS_DENSITY = 5 # points per 1/Angstrom def paths2kpts(paths, cell, npoints=None, density=None): if not(npoints is None or density is None): raise ValueError('You may define npoints or density, but not both.') points = np.concatenate(paths) dists = points[1:] - points[:-1] lengths = [np.linalg.norm(d) for d in kpoint_convert(cell, skpts_kc=dists)] i = 0 for path in paths[:-1]: i += len(path) lengths[i - 1] = 0 length = sum(lengths) if npoints is None: if density is None: density = DEFAULT_KPTS_DENSITY # Set npoints using the length of the path npoints = int(round(length * density)) kpts = [] x0 = 0 x = [] X = [0] for P, d, L in zip(points[:-1], dists, lengths): diff = length - x0 if abs(diff) < 1e-6: n = 0 else: n = max(2, int(round(L * (npoints - len(x)) / diff))) for t in np.linspace(0, 1, n)[:-1]: kpts.append(P + t * d) x.append(x0 + t * L) x0 += L X.append(x0) if len(points): kpts.append(points[-1]) x.append(x0) if len(kpts) == 0: kpts = np.empty((0, 3)) return np.array(kpts), np.array(x), np.array(X) get_bandpath = bandpath # old name def find_bandpath_kinks(cell, kpts, eps=1e-5): """Find indices of those kpoints that are not interiour to a line segment.""" diffs = kpts[1:] - kpts[:-1] kinks = abs(diffs[1:] - diffs[:-1]).sum(1) > eps N = len(kpts) indices = [] if N > 0: indices.append(0) indices.extend(np.arange(1, N - 1)[kinks]) indices.append(N - 1) return indices
[docs]def labels_from_kpts(kpts, cell, eps=1e-5, special_points=None): """Get an x-axis to be used when plotting a band structure. The first of the returned lists can be used as a x-axis when plotting the band structure. The second list can be used as xticks, and the third as xticklabels. Parameters: kpts: list List of scaled k-points. cell: list Unit cell of the atomic structure. Returns: Three arrays; the first is a list of cumulative distances between k-points, the second is x coordinates of the special points, the third is the special points as strings. """ if special_points is None: special_points = get_special_points(cell) points = np.asarray(kpts) indices = find_bandpath_kinks(cell, kpts, eps=1e-5) labels = [] for kpt in points[indices]: for label, k in special_points.items(): if abs(kpt - k).sum() < eps: break else: # No exact match. Try modulus 1: for label, k in special_points.items(): if abs((kpt - k) % 1).sum() < eps: break else: label = '?' labels.append(label) jump = False # marks a discontinuity in the path xcoords = [0] for i1, i2 in zip(indices[:-1], indices[1:]): if not jump and i1 + 1 == i2: length = 0 jump = True # we don't want two jumps in a row else: diff = points[i2] - points[i1] length = np.linalg.norm(kpoint_convert(cell, skpts_kc=diff)) jump = False xcoords.extend(np.linspace(0, length, i2 - i1 + 1)[1:] + xcoords[-1]) xcoords = np.array(xcoords) return xcoords, xcoords[indices], labels
special_paths = { 'cubic': 'GXMGRX,MR', 'fcc': 'GXWKGLUWLK,UX', 'bcc': 'GHNGPH,PN', 'tetragonal': 'GXMGZRAZXR,MA', 'orthorhombic': 'GXSYGZURTZ,YT,UX,SR', 'hexagonal': 'GMKGALHA,LM,KH', 'monoclinic': 'GYHCEM1AXH1,MDZ,YD', 'rhombohedral type 1': 'GLB1,BZGX,QFP1Z,LP', 'rhombohedral type 2': 'GPZQGFP1Q1LZ'} class CellInfo: def __init__(self, rcell, lattice, special_points): self.rcell = rcell self.lattice = lattice self.special_points = special_points def get_cellinfo(cell, lattice=None, eps=2e-4): from ase.build.tools import niggli_reduce_cell rcell, M = niggli_reduce_cell(cell) latt = crystal_structure_from_cell(rcell, niggli_reduce=False) if lattice: assert latt == lattice.lower(), latt if latt == 'monoclinic': # Transform From Niggli to Setyawana-Curtarolo cell: a, b, c, alpha, beta, gamma = cell_to_cellpar(rcell, radians=True) if abs(beta - np.pi / 2) > eps: T = np.array([[0, 1, 0], [-1, 0, 0], [0, 0, 1]]) scell = np.dot(T, rcell) elif abs(gamma - np.pi / 2) > eps: T = np.array([[0, 0, 1], [1, 0, 0], [0, -1, 0]]) else: raise ValueError('You are using a badly oriented ' + 'monoclinic unit cell. Please choose one with ' + 'either beta or gamma != pi/2') scell = np.dot(np.dot(T, rcell), T.T) a, b, c, alpha, beta, gamma = cell_to_cellpar(scell, radians=True) assert alpha < np.pi / 2, 'Your monoclinic angle has to be < pi / 2' M = np.dot(M, T.T) eta = (1 - b * cos(alpha) / c) / (2 * sin(alpha)**2) nu = 1 / 2 - eta * c * cos(alpha) / b points = {'G': [0, 0, 0], 'A': [1 / 2, 1 / 2, 0], 'C': [0, 1 / 2, 1 / 2], 'D': [1 / 2, 0, 1 / 2], 'D1': [1 / 2, 0, -1 / 2], 'E': [1 / 2, 1 / 2, 1 / 2], 'H': [0, eta, 1 - nu], 'H1': [0, 1 - eta, nu], 'H2': [0, eta, -nu], 'M': [1 / 2, eta, 1 - nu], 'M1': [1 / 2, 1 - eta, nu], 'M2': [1 / 2, eta, -nu], 'X': [0, 1 / 2, 0], 'Y': [0, 0, 1 / 2], 'Y1': [0, 0, -1 / 2], 'Z': [1 / 2, 0, 0]} elif latt == 'rhombohedral type 1': a, b, c, alpha, beta, gamma = cell_to_cellpar(cell=cell, radians=True) eta = (1 + 4 * np.cos(alpha)) / (2 + 4 * np.cos(alpha)) nu = 3 / 4 - eta / 2 points = {'G': [0, 0, 0], 'B': [eta, 1 / 2, 1 - eta], 'B1': [1 / 2, 1 - eta, eta - 1], 'F': [1 / 2, 1 / 2, 0], 'L': [1 / 2, 0, 0], 'L1': [0, 0, - 1 / 2], 'P': [eta, nu, nu], 'P1': [1 - nu, 1 - nu, 1 - eta], 'P2': [nu, nu, eta - 1], 'Q': [1 - nu, nu, 0], 'X': [nu, 0, -nu], 'Z': [0.5, 0.5, 0.5]} else: points = sc_special_points[latt] myspecial_points = {label: np.dot(M, kpt) for label, kpt in points.items()} return CellInfo(rcell=rcell, lattice=latt, special_points=myspecial_points)
[docs]def get_special_points(cell, lattice=None, eps=2e-4): """Return dict of special points. The definitions are from a paper by Wahyu Setyawana and Stefano Curtarolo:: http://dx.doi.org/10.1016/j.commatsci.2010.05.010 cell: 3x3 ndarray Unit cell. lattice: str Optionally check that the cell is one of the following: cubic, fcc, bcc, orthorhombic, tetragonal, hexagonal or monoclinic. eps: float Tolerance for cell-check. """ if isinstance(cell, str): warnings.warn('Please call this function with cell as the first ' 'argument') lattice, cell = cell, lattice cell = Cell.ascell(cell) # We create the bandpath because we want to transform the kpoints too, # from the canonical cell to the given one. # # Note that this function is missing a tolerance, epsilon. path = cell.bandpath(npoints=0) return path.special_points
[docs]def monkhorst_pack_interpolate(path, values, icell, bz2ibz, size, offset=(0, 0, 0)): """Interpolate values from Monkhorst-Pack sampling. path: (nk, 3) array-like Desired path in units of reciprocal lattice vectors. values: (nibz, ...) array-like Values on Monkhorst-Pack grid. icell: (3, 3) array-like Reciprocal lattice vectors. bz2ibz: (nbz,) array-like of int Map from nbz points in BZ to nibz reduced points in IBZ. size: (3,) array-like of int Size of Monkhorst-Pack grid. offset: (3,) array-like Offset of Monkhorst-Pack grid. Returns *values* interpolated to *path*. """ from scipy.interpolate import LinearNDInterpolator path = (np.asarray(path) + 0.5) % 1 - 0.5 path = np.dot(path, icell) # Fold out values from IBZ to BZ: v = np.asarray(values)[bz2ibz] v = v.reshape(tuple(size) + v.shape[1:]) # Create padded Monkhorst-Pack grid: size = np.asarray(size) i = np.indices(size + 2).transpose((1, 2, 3, 0)).reshape((-1, 3)) k = (i - 0.5) / size - 0.5 + offset k = np.dot(k, icell) # Fill in boundary values: V = np.zeros(tuple(size + 2) + v.shape[3:]) V[1:-1, 1:-1, 1:-1] = v V[0, 1:-1, 1:-1] = v[-1] V[-1, 1:-1, 1:-1] = v[0] V[:, 0, 1:-1] = V[:, -2, 1:-1] V[:, -1, 1:-1] = V[:, 1, 1:-1] V[:, :, 0] = V[:, :, -2] V[:, :, -1] = V[:, :, 1] interpolate = LinearNDInterpolator(k, V.reshape((-1,) + V.shape[3:])) return interpolate(path)
# ChadiCohen k point grids. The k point grids are given in units of the # reciprocal unit cell. The variables are named after the following # convention: cc+'<Nkpoints>'+_+'shape'. For example an 18 k point # sq(3)xsq(3) is named 'cc18_sq3xsq3'. cc6_1x1 = np.array([ 1, 1, 0, 1, 0, 0, 0, -1, 0, -1, -1, 0, -1, 0, 0, 0, 1, 0]).reshape((6, 3)) / 3.0 cc12_2x3 = np.array([ 3, 4, 0, 3, 10, 0, 6, 8, 0, 3, -2, 0, 6, -4, 0, 6, 2, 0, -3, 8, 0, -3, 2, 0, -3, -4, 0, -6, 4, 0, -6, -2, 0, -6, -8, 0]).reshape((12, 3)) / 18.0 cc18_sq3xsq3 = np.array([ 2, 2, 0, 4, 4, 0, 8, 2, 0, 4, -2, 0, 8, -4, 0, 10, -2, 0, 10, -8, 0, 8, -10, 0, 2, -10, 0, 4, -8, 0, -2, -8, 0, 2, -4, 0, -4, -4, 0, -2, -2, 0, -4, 2, 0, -2, 4, 0, -8, 4, 0, -4, 8, 0]).reshape((18, 3)) / 18.0 cc18_1x1 = np.array([ 2, 4, 0, 2, 10, 0, 4, 8, 0, 8, 4, 0, 8, 10, 0, 10, 8, 0, 2, -2, 0, 4, -4, 0, 4, 2, 0, -2, 8, 0, -2, 2, 0, -2, -4, 0, -4, 4, 0, -4, -2, 0, -4, -8, 0, -8, 2, 0, -8, -4, 0, -10, -2, 0]).reshape((18, 3)) / 18.0 cc54_sq3xsq3 = np.array([ 4, -10, 0, 6, -10, 0, 0, -8, 0, 2, -8, 0, 6, -8, 0, 8, -8, 0, -4, -6, 0, -2, -6, 0, 2, -6, 0, 4, -6, 0, 8, -6, 0, 10, -6, 0, -6, -4, 0, -2, -4, 0, 0, -4, 0, 4, -4, 0, 6, -4, 0, 10, -4, 0, -6, -2, 0, -4, -2, 0, 0, -2, 0, 2, -2, 0, 6, -2, 0, 8, -2, 0, -8, 0, 0, -4, 0, 0, -2, 0, 0, 2, 0, 0, 4, 0, 0, 8, 0, 0, -8, 2, 0, -6, 2, 0, -2, 2, 0, 0, 2, 0, 4, 2, 0, 6, 2, 0, -10, 4, 0, -6, 4, 0, -4, 4, 0, 0, 4, 0, 2, 4, 0, 6, 4, 0, -10, 6, 0, -8, 6, 0, -4, 6, 0, -2, 6, 0, 2, 6, 0, 4, 6, 0, -8, 8, 0, -6, 8, 0, -2, 8, 0, 0, 8, 0, -6, 10, 0, -4, 10, 0]).reshape((54, 3)) / 18.0 cc54_1x1 = np.array([ 2, 2, 0, 4, 4, 0, 8, 8, 0, 6, 8, 0, 4, 6, 0, 6, 10, 0, 4, 10, 0, 2, 6, 0, 2, 8, 0, 0, 2, 0, 0, 4, 0, 0, 8, 0, -2, 6, 0, -2, 4, 0, -4, 6, 0, -6, 4, 0, -4, 2, 0, -6, 2, 0, -2, 0, 0, -4, 0, 0, -8, 0, 0, -8, -2, 0, -6, -2, 0, -10, -4, 0, -10, -6, 0, -6, -4, 0, -8, -6, 0, -2, -2, 0, -4, -4, 0, -8, -8, 0, 4, -2, 0, 6, -2, 0, 6, -4, 0, 2, 0, 0, 4, 0, 0, 6, 2, 0, 6, 4, 0, 8, 6, 0, 8, 0, 0, 8, 2, 0, 10, 4, 0, 10, 6, 0, 2, -4, 0, 2, -6, 0, 4, -6, 0, 0, -2, 0, 0, -4, 0, -2, -6, 0, -4, -6, 0, -6, -8, 0, 0, -8, 0, -2, -8, 0, -4, -10, 0, -6, -10, 0]).reshape((54, 3)) / 18.0 cc162_sq3xsq3 = np.array([ -8, 16, 0, -10, 14, 0, -7, 14, 0, -4, 14, 0, -11, 13, 0, -8, 13, 0, -5, 13, 0, -2, 13, 0, -13, 11, 0, -10, 11, 0, -7, 11, 0, -4, 11, 0, -1, 11, 0, 2, 11, 0, -14, 10, 0, -11, 10, 0, -8, 10, 0, -5, 10, 0, -2, 10, 0, 1, 10, 0, 4, 10, 0, -16, 8, 0, -13, 8, 0, -10, 8, 0, -7, 8, 0, -4, 8, 0, -1, 8, 0, 2, 8, 0, 5, 8, 0, 8, 8, 0, -14, 7, 0, -11, 7, 0, -8, 7, 0, -5, 7, 0, -2, 7, 0, 1, 7, 0, 4, 7, 0, 7, 7, 0, 10, 7, 0, -13, 5, 0, -10, 5, 0, -7, 5, 0, -4, 5, 0, -1, 5, 0, 2, 5, 0, 5, 5, 0, 8, 5, 0, 11, 5, 0, -14, 4, 0, -11, 4, 0, -8, 4, 0, -5, 4, 0, -2, 4, 0, 1, 4, 0, 4, 4, 0, 7, 4, 0, 10, 4, 0, -13, 2, 0, -10, 2, 0, -7, 2, 0, -4, 2, 0, -1, 2, 0, 2, 2, 0, 5, 2, 0, 8, 2, 0, 11, 2, 0, -11, 1, 0, -8, 1, 0, -5, 1, 0, -2, 1, 0, 1, 1, 0, 4, 1, 0, 7, 1, 0, 10, 1, 0, 13, 1, 0, -10, -1, 0, -7, -1, 0, -4, -1, 0, -1, -1, 0, 2, -1, 0, 5, -1, 0, 8, -1, 0, 11, -1, 0, 14, -1, 0, -11, -2, 0, -8, -2, 0, -5, -2, 0, -2, -2, 0, 1, -2, 0, 4, -2, 0, 7, -2, 0, 10, -2, 0, 13, -2, 0, -10, -4, 0, -7, -4, 0, -4, -4, 0, -1, -4, 0, 2, -4, 0, 5, -4, 0, 8, -4, 0, 11, -4, 0, 14, -4, 0, -8, -5, 0, -5, -5, 0, -2, -5, 0, 1, -5, 0, 4, -5, 0, 7, -5, 0, 10, -5, 0, 13, -5, 0, 16, -5, 0, -7, -7, 0, -4, -7, 0, -1, -7, 0, 2, -7, 0, 5, -7, 0, 8, -7, 0, 11, -7, 0, 14, -7, 0, 17, -7, 0, -8, -8, 0, -5, -8, 0, -2, -8, 0, 1, -8, 0, 4, -8, 0, 7, -8, 0, 10, -8, 0, 13, -8, 0, 16, -8, 0, -7, -10, 0, -4, -10, 0, -1, -10, 0, 2, -10, 0, 5, -10, 0, 8, -10, 0, 11, -10, 0, 14, -10, 0, 17, -10, 0, -5, -11, 0, -2, -11, 0, 1, -11, 0, 4, -11, 0, 7, -11, 0, 10, -11, 0, 13, -11, 0, 16, -11, 0, -1, -13, 0, 2, -13, 0, 5, -13, 0, 8, -13, 0, 11, -13, 0, 14, -13, 0, 1, -14, 0, 4, -14, 0, 7, -14, 0, 10, -14, 0, 13, -14, 0, 5, -16, 0, 8, -16, 0, 11, -16, 0, 7, -17, 0, 10, -17, 0]).reshape((162, 3)) / 27.0 cc162_1x1 = np.array([ -8, -16, 0, -10, -14, 0, -7, -14, 0, -4, -14, 0, -11, -13, 0, -8, -13, 0, -5, -13, 0, -2, -13, 0, -13, -11, 0, -10, -11, 0, -7, -11, 0, -4, -11, 0, -1, -11, 0, 2, -11, 0, -14, -10, 0, -11, -10, 0, -8, -10, 0, -5, -10, 0, -2, -10, 0, 1, -10, 0, 4, -10, 0, -16, -8, 0, -13, -8, 0, -10, -8, 0, -7, -8, 0, -4, -8, 0, -1, -8, 0, 2, -8, 0, 5, -8, 0, 8, -8, 0, -14, -7, 0, -11, -7, 0, -8, -7, 0, -5, -7, 0, -2, -7, 0, 1, -7, 0, 4, -7, 0, 7, -7, 0, 10, -7, 0, -13, -5, 0, -10, -5, 0, -7, -5, 0, -4, -5, 0, -1, -5, 0, 2, -5, 0, 5, -5, 0, 8, -5, 0, 11, -5, 0, -14, -4, 0, -11, -4, 0, -8, -4, 0, -5, -4, 0, -2, -4, 0, 1, -4, 0, 4, -4, 0, 7, -4, 0, 10, -4, 0, -13, -2, 0, -10, -2, 0, -7, -2, 0, -4, -2, 0, -1, -2, 0, 2, -2, 0, 5, -2, 0, 8, -2, 0, 11, -2, 0, -11, -1, 0, -8, -1, 0, -5, -1, 0, -2, -1, 0, 1, -1, 0, 4, -1, 0, 7, -1, 0, 10, -1, 0, 13, -1, 0, -10, 1, 0, -7, 1, 0, -4, 1, 0, -1, 1, 0, 2, 1, 0, 5, 1, 0, 8, 1, 0, 11, 1, 0, 14, 1, 0, -11, 2, 0, -8, 2, 0, -5, 2, 0, -2, 2, 0, 1, 2, 0, 4, 2, 0, 7, 2, 0, 10, 2, 0, 13, 2, 0, -10, 4, 0, -7, 4, 0, -4, 4, 0, -1, 4, 0, 2, 4, 0, 5, 4, 0, 8, 4, 0, 11, 4, 0, 14, 4, 0, -8, 5, 0, -5, 5, 0, -2, 5, 0, 1, 5, 0, 4, 5, 0, 7, 5, 0, 10, 5, 0, 13, 5, 0, 16, 5, 0, -7, 7, 0, -4, 7, 0, -1, 7, 0, 2, 7, 0, 5, 7, 0, 8, 7, 0, 11, 7, 0, 14, 7, 0, 17, 7, 0, -8, 8, 0, -5, 8, 0, -2, 8, 0, 1, 8, 0, 4, 8, 0, 7, 8, 0, 10, 8, 0, 13, 8, 0, 16, 8, 0, -7, 10, 0, -4, 10, 0, -1, 10, 0, 2, 10, 0, 5, 10, 0, 8, 10, 0, 11, 10, 0, 14, 10, 0, 17, 10, 0, -5, 11, 0, -2, 11, 0, 1, 11, 0, 4, 11, 0, 7, 11, 0, 10, 11, 0, 13, 11, 0, 16, 11, 0, -1, 13, 0, 2, 13, 0, 5, 13, 0, 8, 13, 0, 11, 13, 0, 14, 13, 0, 1, 14, 0, 4, 14, 0, 7, 14, 0, 10, 14, 0, 13, 14, 0, 5, 16, 0, 8, 16, 0, 11, 16, 0, 7, 17, 0, 10, 17, 0]).reshape((162, 3)) / 27.0 # The following is a list of the critical points in the 1st Brillouin zone # for some typical crystal structures following the conventions of Setyawan # and Curtarolo [http://dx.doi.org/10.1016/j.commatsci.2010.05.010]. # # In units of the reciprocal basis vectors. # # See http://en.wikipedia.org/wiki/Brillouin_zone sc_special_points = { 'cubic': {'G': [0, 0, 0], 'M': [1 / 2, 1 / 2, 0], 'R': [1 / 2, 1 / 2, 1 / 2], 'X': [0, 1 / 2, 0]}, 'fcc': {'G': [0, 0, 0], 'K': [3 / 8, 3 / 8, 3 / 4], 'L': [1 / 2, 1 / 2, 1 / 2], 'U': [5 / 8, 1 / 4, 5 / 8], 'W': [1 / 2, 1 / 4, 3 / 4], 'X': [1 / 2, 0, 1 / 2]}, 'bcc': {'G': [0, 0, 0], 'H': [1 / 2, -1 / 2, 1 / 2], 'P': [1 / 4, 1 / 4, 1 / 4], 'N': [0, 0, 1 / 2]}, 'tetragonal': {'G': [0, 0, 0], 'A': [1 / 2, 1 / 2, 1 / 2], 'M': [1 / 2, 1 / 2, 0], 'R': [0, 1 / 2, 1 / 2], 'X': [0, 1 / 2, 0], 'Z': [0, 0, 1 / 2]}, 'orthorhombic': {'G': [0, 0, 0], 'R': [1 / 2, 1 / 2, 1 / 2], 'S': [1 / 2, 1 / 2, 0], 'T': [0, 1 / 2, 1 / 2], 'U': [1 / 2, 0, 1 / 2], 'X': [1 / 2, 0, 0], 'Y': [0, 1 / 2, 0], 'Z': [0, 0, 1 / 2]}, 'hexagonal': {'G': [0, 0, 0], 'A': [0, 0, 1 / 2], 'H': [1 / 3, 1 / 3, 1 / 2], 'K': [1 / 3, 1 / 3, 0], 'L': [1 / 2, 0, 1 / 2], 'M': [1 / 2, 0, 0]}} # Old version of dictionary kept for backwards compatibility. # Not for ordinary use. ibz_points = {'cubic': {'Gamma': [0, 0, 0], 'X': [0, 0 / 2, 1 / 2], 'R': [1 / 2, 1 / 2, 1 / 2], 'M': [0 / 2, 1 / 2, 1 / 2]}, 'fcc': {'Gamma': [0, 0, 0], 'X': [1 / 2, 0, 1 / 2], 'W': [1 / 2, 1 / 4, 3 / 4], 'K': [3 / 8, 3 / 8, 3 / 4], 'U': [5 / 8, 1 / 4, 5 / 8], 'L': [1 / 2, 1 / 2, 1 / 2]}, 'bcc': {'Gamma': [0, 0, 0], 'H': [1 / 2, -1 / 2, 1 / 2], 'N': [0, 0, 1 / 2], 'P': [1 / 4, 1 / 4, 1 / 4]}, 'hexagonal': {'Gamma': [0, 0, 0], 'M': [0, 1 / 2, 0], 'K': [-1 / 3, 1 / 3, 0], 'A': [0, 0, 1 / 2], 'L': [0, 1 / 2, 1 / 2], 'H': [-1 / 3, 1 / 3, 1 / 2]}, 'tetragonal': {'Gamma': [0, 0, 0], 'X': [1 / 2, 0, 0], 'M': [1 / 2, 1 / 2, 0], 'Z': [0, 0, 1 / 2], 'R': [1 / 2, 0, 1 / 2], 'A': [1 / 2, 1 / 2, 1 / 2]}, 'orthorhombic': {'Gamma': [0, 0, 0], 'R': [1 / 2, 1 / 2, 1 / 2], 'S': [1 / 2, 1 / 2, 0], 'T': [0, 1 / 2, 1 / 2], 'U': [1 / 2, 0, 1 / 2], 'X': [1 / 2, 0, 0], 'Y': [0, 1 / 2, 0], 'Z': [0, 0, 1 / 2]}}