Understand and Describe Bayesian Models and Posterior Distributions


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Documentation for package ‘bayestestR’ version 0.2.2

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A B C D E H M P R U

-- A --

area_under_curve Area under the Curve (AUC)
as.data.frame.density Coerce to a Data Frame
as.numeric.p_direction Convert to Numeric
as.numeric.p_map Convert to Numeric
as.numeric.p_rope Convert to Numeric
auc Area under the Curve (AUC)

-- B --

bayesfactor Bayes Factors (BF)
bayesfactor_inclusion Inclusion Bayes Factors for testing effects across Bayesian models
bayesfactor_models Bayes Factors (BF) for model comparison
bayesfactor_savagedickey Savage-Dickey density ratio Bayes Factor (BF)
bayesfactor_savagedickey.brmsfit Savage-Dickey density ratio Bayes Factor (BF)
bayesfactor_savagedickey.data.frame Savage-Dickey density ratio Bayes Factor (BF)
bayesfactor_savagedickey.emmGrid Savage-Dickey density ratio Bayes Factor (BF)
bayesfactor_savagedickey.numeric Savage-Dickey density ratio Bayes Factor (BF)
bayesfactor_savagedickey.stanreg Savage-Dickey density ratio Bayes Factor (BF)

-- C --

ci Confidence/Credible Interval (CI)
ci.BFBayesFactor Confidence/Credible Interval (CI)
ci.brmsfit Confidence/Credible Interval (CI)
ci.data.frame Confidence/Credible Interval (CI)
ci.emmGrid Confidence/Credible Interval (CI)
ci.numeric Confidence/Credible Interval (CI)
ci.stanreg Confidence/Credible Interval (CI)
convert_pd_to_p Convert between Probability of Direction (pd) and p-value.
convert_p_to_pd Convert between Probability of Direction (pd) and p-value.

-- D --

density_at Probability of a Given Point
describe_posterior Describe Posterior Distributions
describe_posterior.BFBayesFactor Describe Posterior Distributions
describe_posterior.brmsfit Describe Posterior Distributions
describe_posterior.numeric Describe Posterior Distributions
describe_posterior.stanreg Describe Posterior Distributions
describe_prior Describe Priors
diagnostic_posterior Posteriors Sampling Diagnostic
diagnostic_posterior.brmsfit Posteriors Sampling Diagnostic
diagnostic_posterior.stanreg Posteriors Sampling Diagnostic
distribution Empirical Distributions
distribution_beta Empirical Distributions
distribution_cauchy Empirical Distributions
distribution_chisquared Empirical Distributions
distribution_custom Empirical Distributions
distribution_mixture_normal Empirical Distributions
distribution_normal Empirical Distributions
distribution_poisson Empirical Distributions
distribution_student Empirical Distributions
distribution_uniform Empirical Distributions

-- E --

effective_sample Effective Sample Size (ESS)
effective_sample.brmsfit Effective Sample Size (ESS)
effective_sample.stanreg Effective Sample Size (ESS)
equivalence_test Test for Practical Equivalence
equivalence_test.BFBayesFactor Test for Practical Equivalence
equivalence_test.brmsfit Test for Practical Equivalence
equivalence_test.data.frame Test for Practical Equivalence
equivalence_test.default Test for Practical Equivalence
equivalence_test.emmGrid Test for Practical Equivalence
equivalence_test.numeric Test for Practical Equivalence
equivalence_test.stanreg Test for Practical Equivalence
estimate_density Density Estimation
estimate_probability Density Estimation

-- H --

hdi Highest Density Interval (HDI)
hdi.BFBayesFactor Highest Density Interval (HDI)
hdi.brmsfit Highest Density Interval (HDI)
hdi.data.frame Highest Density Interval (HDI)
hdi.emmGrid Highest Density Interval (HDI)
hdi.numeric Highest Density Interval (HDI)
hdi.stanreg Highest Density Interval (HDI)

-- M --

map_estimate Maximum A Posteriori (MAP) Estimate
map_estimate.brmsfit Maximum A Posteriori (MAP) Estimate
map_estimate.numeric Maximum A Posteriori (MAP) Estimate
map_estimate.stanreg Maximum A Posteriori (MAP) Estimate
mcse Monte-Carlo Standard Error (MCSE)
mcse.stanreg Monte-Carlo Standard Error (MCSE)

-- P --

pd Probability of Direction (pd)
pd_to_p Convert between Probability of Direction (pd) and p-value.
point_estimate Point-estimates of posterior distributions
point_estimate.BFBayesFactor Point-estimates of posterior distributions
point_estimate.brmsfit Point-estimates of posterior distributions
point_estimate.stanreg Point-estimates of posterior distributions
probability_at Probability of a Given Point
p_direction Probability of Direction (pd)
p_direction.BFBayesFactor Probability of Direction (pd)
p_direction.brmsfit Probability of Direction (pd)
p_direction.data.frame Probability of Direction (pd)
p_direction.emmGrid Probability of Direction (pd)
p_direction.numeric Probability of Direction (pd)
p_direction.stanreg Probability of Direction (pd)
p_map Bayesian p-value based on the density at the Maximum A Priori (MAP)
p_map.BFBayesFactor Bayesian p-value based on the density at the Maximum A Priori (MAP)
p_map.brmsfit Bayesian p-value based on the density at the Maximum A Priori (MAP)
p_map.numeric Bayesian p-value based on the density at the Maximum A Priori (MAP)
p_map.stanreg Bayesian p-value based on the density at the Maximum A Priori (MAP)
p_rope ROPE-based p-value
p_rope.BFBayesFactor ROPE-based p-value
p_rope.brmsfit ROPE-based p-value
p_rope.data.frame ROPE-based p-value
p_rope.emmGrid ROPE-based p-value
p_rope.numeric ROPE-based p-value
p_rope.stanreg ROPE-based p-value
p_to_pd Convert between Probability of Direction (pd) and p-value.

-- R --

rnorm_perfect Empirical Distributions
rope Region of Practical Equivalence (ROPE)
rope.BFBayesFactor Region of Practical Equivalence (ROPE)
rope.brmsfit Region of Practical Equivalence (ROPE)
rope.data.frame Region of Practical Equivalence (ROPE)
rope.default Region of Practical Equivalence (ROPE)
rope.emmGrid Region of Practical Equivalence (ROPE)
rope.numeric Region of Practical Equivalence (ROPE)
rope.stanreg Region of Practical Equivalence (ROPE)
rope_range Find Default Equivalence (ROPE) Region Bounds

-- U --

update.bayesfactor_models Update bayesfactor_models