SeqAn3
The Modern C++ library for sequence analysis.
record.hpp File Reference

Provides the seqan3::record template and the seqan3::field enum. More...

#include <tuple>
#include <meta/meta.hpp>
#include <seqan3/core/type_list/type_list.hpp>
#include <seqan3/core/type_traits/template_inspection.hpp>
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Classes

struct  seqan3::fields< fs >
 A class template that holds a choice of seqan3::field. More...
 
struct  seqan3::record< field_types, field_ids >
 The class template that file records are based on; behaves like an std::tuple. More...
 
struct  std::tuple_element< elem_no, seqan3::record< field_types, field_ids > >
 Obtains the type of the specified element. More...
 
struct  std::tuple_size< seqan3::record< field_types, field_ids > >
 Provides access to the number of elements in a tuple as a compile-time constant expression. More...
 

Namespaces

 seqan3
 The main SeqAn3 namespace.
 
 std
 SeqAn specific customisations in the standard namespace.
 

Enumerations

enum  seqan3::field {
  seqan3::field::seq, seqan3::field::id, seqan3::field::qual, seqan3::field::seq_qual,
  seqan3::field::offset, seqan3::field::bpp, seqan3::field::structure, seqan3::field::structured_seq,
  seqan3::field::energy, seqan3::field::react, seqan3::field::react_err, seqan3::field::comment,
  seqan3::field::alignment, seqan3::field::ref_id, seqan3::field::ref_seq, seqan3::field::ref_offset,
  seqan3::field::header_ptr, seqan3::field::flag, seqan3::field::mate, seqan3::field::mapq,
  seqan3::field::cigar, seqan3::field::tags, seqan3::field::bit_score, seqan3::field::evalue,
  seqan3::field::user_defined_0, seqan3::field::user_defined_1, seqan3::field::user_defined_2, seqan3::field::user_defined_3,
  seqan3::field::user_defined_4, seqan3::field::user_defined_5, seqan3::field::user_defined_6, seqan3::field::user_defined_7,
  seqan3::field::user_defined_8, seqan3::field::user_defined_9, seqan3::field::SEQ, seqan3::field::ID,
  seqan3::field::QUAL, seqan3::field::SEQ_QUAL, seqan3::field::OFFSET, seqan3::field::BPP,
  seqan3::field::STRUCTURE, seqan3::field::STRUCTURED_SEQ, seqan3::field::ENERGY, seqan3::field::REACT,
  seqan3::field::REACT_ERR, seqan3::field::COMMENT, seqan3::field::ALIGNMENT, seqan3::field::REF_ID,
  seqan3::field::REF_SEQ, seqan3::field::REF_OFFSET, seqan3::field::HEADER_PTR, seqan3::field::FLAG,
  seqan3::field::MATE, seqan3::field::MAPQ, seqan3::field::CIGAR, seqan3::field::TAGS,
  seqan3::field::BIT_SCORE, seqan3::field::EVALUE, seqan3::field::USER_DEFINED_0, seqan3::field::USER_DEFINED_1,
  seqan3::field::USER_DEFINED_2, seqan3::field::USER_DEFINED_3, seqan3::field::USER_DEFINED_4, seqan3::field::USER_DEFINED_5,
  seqan3::field::USER_DEFINED_6, seqan3::field::USER_DEFINED_7, seqan3::field::USER_DEFINED_8, seqan3::field::USER_DEFINED_9
}
 An enumerator for the fields used in file formats. More...
 

Detailed Description

Provides the seqan3::record template and the seqan3::field enum.

Author
Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>