public class FullBEDFeature.Exon2 extends Object
Constructor | Description |
---|---|
Exon2(int start,
int end,
int codingStart,
int codingDne) |
Modifier and Type | Method | Description |
---|---|---|
int |
getAminoAcidNumber(int genomeCoordinate) |
|
int |
getCdEnd() |
Method description
|
int |
getCdStart() |
Method description
|
int |
getCodingLength() |
Method description
|
int |
getNumber() |
|
String |
getValueString(double position) |
Method description
|
void |
setCodingEnd(int codingEnd) |
Method description
|
void |
setCodingStart(int codingStart) |
Method description
|
void |
setMrnaBase(int base) |
|
void |
setNumber(int number) |
|
void |
setPhase(int phase) |
Method description
|
void |
setReadingFrame(int offset) |
Method description
|
void |
setUTR(boolean utr) |
Flag indicating that the entire exon is the UTR.
|
public void setMrnaBase(int base)
public int getAminoAcidNumber(int genomeCoordinate)
public void setUTR(boolean utr)
utr
- public void setCodingStart(int codingStart)
codingStart
- public void setCodingEnd(int codingEnd)
codingEnd
- public void setReadingFrame(int offset)
offset
- public void setPhase(int phase)
phase
- public int getCdStart()
public int getCdEnd()
public int getCodingLength()
public String getValueString(double position)
public int getNumber()
public void setNumber(int number)