public class BamIndexValidator extends Object
Modifier and Type | Class | Description |
---|---|---|
static class |
BamIndexValidator.IndexValidationStringency |
Constructor | Description |
---|---|
BamIndexValidator() |
Modifier and Type | Method | Description |
---|---|---|
static int |
exhaustivelyTestIndex(SamReader reader) |
|
static int |
lessExhaustivelyTestIndex(SamReader reader) |
A less time-consuming index validation that only looks at the first and last references in the index
and the first and last chunks in each of those
|
public static int exhaustivelyTestIndex(SamReader reader)
public static int lessExhaustivelyTestIndex(SamReader reader)
reader
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