Serializable
public class SAMValidationError extends Object implements Serializable
Modifier and Type | Class | Description |
---|---|---|
static class |
SAMValidationError.Severity |
|
static class |
SAMValidationError.Type |
Modifier and Type | Field | Description |
---|---|---|
static long |
serialVersionUID |
Constructor | Description |
---|---|
SAMValidationError(SAMValidationError.Type type,
String message,
String readName) |
Construct a SAMValidationError with unknown record number.
|
SAMValidationError(SAMValidationError.Type type,
String message,
String readName,
long recordNumber) |
Construct a SAMValidationError with possibly-known record number.
|
Modifier and Type | Method | Description |
---|---|---|
String |
getMessage() |
|
String |
getReadName() |
may be null
|
long |
getRecordNumber() |
1-based.
|
String |
getSource() |
|
SAMValidationError.Type |
getType() |
|
void |
setRecordNumber(long recordNumber) |
|
void |
setSource(String source) |
|
String |
toString() |
public static final long serialVersionUID
public SAMValidationError(SAMValidationError.Type type, String message, String readName)
type
- message
- readName
- May be null if readName is not known.public SAMValidationError(SAMValidationError.Type type, String message, String readName, long recordNumber)
type
- message
- readName
- May be null if readName is not known.recordNumber
- Position of the record in the SAM file it has been read from. -1 if not known.public SAMValidationError.Type getType()
public String getMessage()
public String getReadName()
public long getRecordNumber()
public void setRecordNumber(long recordNumber)
public String getSource()
public void setSource(String source)